Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 AC018470.1-201ENST00000624790 3129 ntBASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 MIR6722-201ENST00000617286 78 ntBASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCX3AQ9NNX9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 AC087239.1-201ENST00000622671 572 ntBASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 AC068587.7-201ENST00000641602 218 ntBASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3AQ9NNX9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VCX3AQ9NNX9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VCX3AQ9NNX9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
VCX3AQ9NNX9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VCX3AQ9NNX9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.77■□□□□ 0.59
VCX3AQ9NNX9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 AL390961.4-201ENST00000623958 2535 ntBASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.76■□□□□ 0.59
VCX3AQ9NNX9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VCX3AQ9NNX9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCX3AQ9NNX9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCX3AQ9NNX9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCX3AQ9NNX9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms