Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM54Q9BYV2 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM54Q9BYV2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM54Q9BYV2 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM54Q9BYV2 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 CYP2T1P-201ENST00000432607 1285 ntBASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 AC080038.1-201ENST00000611274 1154 ntBASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 OR10C1-204ENST00000622521 1039 ntBASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM54Q9BYV2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM54Q9BYV2 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms