Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COPS4Q9BT78 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COPS4Q9BT78 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.4■□□□□ 0.54
COPS4Q9BT78 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COPS4Q9BT78 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
COPS4Q9BT78 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
COPS4Q9BT78 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COPS4Q9BT78 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COPS4Q9BT78 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.39■□□□□ 0.53
COPS4Q9BT78 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 AC120498.9-201ENST00000339021 3867 ntBASIC18.38■□□□□ 0.53
COPS4Q9BT78 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.38■□□□□ 0.53
COPS4Q9BT78 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COPS4Q9BT78 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.37■□□□□ 0.53
COPS4Q9BT78 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 AL358852.1-201ENST00000623174 1268 ntBASIC18.37■□□□□ 0.53
COPS4Q9BT78 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.37■□□□□ 0.53
COPS4Q9BT78 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COPS4Q9BT78 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COPS4Q9BT78 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms