Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 MYC-209ENST00000641252 345 ntBASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCGF1Q9BSM1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 AC006128.1-201ENST00000624704 1661 ntBASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCGF1Q9BSM1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.79■□□□□ 0.28
PCGF1Q9BSM1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 PGM5P4-201ENST00000421970 445 ntBASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCGF1Q9BSM1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PCGF1Q9BSM1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms