Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 DPP3P2-201ENST00000416030 1696 ntBASIC17.49■□□□□ 0.39
NKX3-1Q99801 AL691432.2-201ENST00000607222 2038 ntBASIC17.49■□□□□ 0.39
NKX3-1Q99801 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NKX3-1Q99801 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NKX3-1Q99801 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.49■□□□□ 0.39
NKX3-1Q99801 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NKX3-1Q99801 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NKX3-1Q99801 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NKX3-1Q99801 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX3-1Q99801 AC098818.2-201ENST00000564925 2320 ntBASIC17.48■□□□□ 0.39
NKX3-1Q99801 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX3-1Q99801 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX3-1Q99801 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX3-1Q99801 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
NKX3-1Q99801 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX3-1Q99801 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 AP001160.3-201ENST00000601484 763 ntBASIC17.47■□□□□ 0.39
NKX3-1Q99801 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX3-1Q99801 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.47■□□□□ 0.39
NKX3-1Q99801 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 YBX1P1-201ENST00000445822 960 ntBASIC17.46■□□□□ 0.39
NKX3-1Q99801 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX3-1Q99801 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms