Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.72■□□□□ 0.43
COL12A1Q99715 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL12A1Q99715 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.72■□□□□ 0.43
COL12A1Q99715 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.72■□□□□ 0.43
COL12A1Q99715 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.72■□□□□ 0.43
COL12A1Q99715 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.72■□□□□ 0.43
COL12A1Q99715 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.72■□□□□ 0.43
COL12A1Q99715 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.72■□□□□ 0.43
COL12A1Q99715 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL12A1Q99715 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL12A1Q99715 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
COL12A1Q99715 IER3-202ENST00000376377 1350 ntBASIC17.71■□□□□ 0.43
COL12A1Q99715 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.71■□□□□ 0.43
COL12A1Q99715 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL12A1Q99715 AC092647.4-201ENST00000457211 535 ntBASIC17.71■□□□□ 0.43
COL12A1Q99715 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.71■□□□□ 0.43
COL12A1Q99715 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
COL12A1Q99715 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL12A1Q99715 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL12A1Q99715 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL12A1Q99715 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL12A1Q99715 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.7■□□□□ 0.42
COL12A1Q99715 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 AP005242.2-201ENST00000580065 1175 ntBASIC17.7■□□□□ 0.42
COL12A1Q99715 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.7■□□□□ 0.42
COL12A1Q99715 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.7■□□□□ 0.42
COL12A1Q99715 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL12A1Q99715 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.7■□□□□ 0.42
COL12A1Q99715 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.7■□□□□ 0.42
COL12A1Q99715 C2orf69P3-201ENST00000565542 1120 ntBASIC17.7■□□□□ 0.42
COL12A1Q99715 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL12A1Q99715 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.7■□□□□ 0.42
COL12A1Q99715 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL12A1Q99715 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.7■□□□□ 0.42
COL12A1Q99715 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL12A1Q99715 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL12A1Q99715 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.7■□□□□ 0.42
COL12A1Q99715 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.69■□□□□ 0.42
COL12A1Q99715 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 EGLN1P1-201ENST00000531623 762 ntBASIC17.69■□□□□ 0.42
COL12A1Q99715 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.69■□□□□ 0.42
COL12A1Q99715 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.69■□□□□ 0.42
COL12A1Q99715 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.69■□□□□ 0.42
COL12A1Q99715 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.69■□□□□ 0.42
COL12A1Q99715 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
COL12A1Q99715 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.69■□□□□ 0.42
COL12A1Q99715 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.69■□□□□ 0.42
COL12A1Q99715 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL12A1Q99715 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL12A1Q99715 AL121829.2-201ENST00000620908 328 ntBASIC17.69■□□□□ 0.42
COL12A1Q99715 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.69■□□□□ 0.42
COL12A1Q99715 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.68■□□□□ 0.42
COL12A1Q99715 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
COL12A1Q99715 AL031985.4-201ENST00000642138 673 ntBASIC17.68■□□□□ 0.42
COL12A1Q99715 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL12A1Q99715 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.68■□□□□ 0.42
COL12A1Q99715 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.68■□□□□ 0.42
COL12A1Q99715 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
COL12A1Q99715 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 KSR1P1-201ENST00000446298 240 ntBASIC17.68■□□□□ 0.42
COL12A1Q99715 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.68■□□□□ 0.42
COL12A1Q99715 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.68■□□□□ 0.42
COL12A1Q99715 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
COL12A1Q99715 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
COL12A1Q99715 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.68■□□□□ 0.42
COL12A1Q99715 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms