Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL158047.1-201ENST00000445918 881 ntBASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 AC011484.1-201ENST00000377652 1995 ntBASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 UNC93B4-201ENST00000505679 747 ntBASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 AC142381.4-202ENST00000563973 229 ntBASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 SOX15-203ENST00000570788 1093 ntBASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 AC073648.6-201ENST00000641589 218 ntBASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 AL137060.1-201ENST00000618151 2648 ntBASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP3Q96DZ5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.33■□□□□ 0.69
CLIP3Q96DZ5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP3Q96DZ5 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP3Q96DZ5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP3Q96DZ5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP3Q96DZ5 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 KRT17P3-201ENST00000420566 1262 ntBASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AC098590.1-201ENST00000468126 897 ntBASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 RPS2P52-201ENST00000469610 820 ntBASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AC093827.2-201ENST00000512654 315 ntBASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AC008403.3-201ENST00000598924 454 ntBASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.33■□□□□ 0.68
CLIP3Q96DZ5 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 AC005229.4-201ENST00000610085 2198 ntBASIC19.32■□□□□ 0.68
CLIP3Q96DZ5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 GCSHP5-201ENST00000443090 522 ntBASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 AP006294.2-201ENST00000641667 209 ntBASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLIP3Q96DZ5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms