Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.6■□□□□ 0.89
SKA1Q96BD8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 AC006058.3-201ENST00000606217 1069 ntBASIC20.6■□□□□ 0.89
SKA1Q96BD8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SKA1Q96BD8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 PCDHAC2-203ENST00000615316 3011 ntBASIC20.59■□□□□ 0.89
SKA1Q96BD8 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA1Q96BD8 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA1Q96BD8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA1Q96BD8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA1Q96BD8 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA1Q96BD8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA1Q96BD8 AC091799.1-201ENST00000422823 811 ntBASIC20.59■□□□□ 0.89
SKA1Q96BD8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 AL589743.5-201ENST00000616611 1050 ntBASIC20.59■□□□□ 0.89
SKA1Q96BD8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SKA1Q96BD8 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SKA1Q96BD8 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SKA1Q96BD8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SKA1Q96BD8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SKA1Q96BD8 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.58■□□□□ 0.89
SKA1Q96BD8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SKA1Q96BD8 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.58■□□□□ 0.89
SKA1Q96BD8 AC026366.1-201ENST00000488803 879 ntBASIC20.58■□□□□ 0.89
SKA1Q96BD8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.58■□□□□ 0.89
SKA1Q96BD8 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SKA1Q96BD8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SKA1Q96BD8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SKA1Q96BD8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SKA1Q96BD8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SKA1Q96BD8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SKA1Q96BD8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 UNC93B5-201ENST00000530315 699 ntBASIC20.57■□□□□ 0.88
SKA1Q96BD8 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 CYP2T3P-201ENST00000601990 817 ntBASIC20.57■□□□□ 0.88
SKA1Q96BD8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.57■□□□□ 0.88
SKA1Q96BD8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA1Q96BD8 AC027702.1-201ENST00000563810 1770 ntBASIC20.57■□□□□ 0.88
SKA1Q96BD8 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.56■□□□□ 0.88
SKA1Q96BD8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 MCRIP2P1-201ENST00000394346 511 ntBASIC20.56■□□□□ 0.88
SKA1Q96BD8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.56■□□□□ 0.88
SKA1Q96BD8 AC128676.1-201ENST00000454392 318 ntBASIC20.56■□□□□ 0.88
SKA1Q96BD8 AC142381.4-202ENST00000563973 229 ntBASIC20.56■□□□□ 0.88
SKA1Q96BD8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.56■□□□□ 0.88
SKA1Q96BD8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SKA1Q96BD8 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SKA1Q96BD8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SKA1Q96BD8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.56■□□□□ 0.88
SKA1Q96BD8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SKA1Q96BD8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
SKA1Q96BD8 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms