Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.53e-6■■□□□ 13.7
DDX55Q8NHQ9 GALNT12-202ENST00000470473 772 ntTSL 26.38□□□□□ -1.393e-6■■□□□ 13.7
DDX55Q8NHQ9 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.28■□□□□ 0.841e-12■■□□□ 13.7
DDX55Q8NHQ9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.22e-6■■□□□ 13.7
DDX55Q8NHQ9 EML2-205ENST00000586195 1952 ntTSL 222.43■■□□□ 1.182e-6■■□□□ 13.7
DDX55Q8NHQ9 EML2-215ENST00000588308 2062 ntTSL 222.26■■□□□ 1.152e-6■■□□□ 13.7
DDX55Q8NHQ9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 12e-6■■□□□ 13.7
DDX55Q8NHQ9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.492e-6■■□□□ 13.7
DDX55Q8NHQ9 ALDH1A1-201ENST00000297785 2107 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.062e-8■■□□□ 13.7
DDX55Q8NHQ9 NASP-209ENST00000472408 541 ntTSL 212.23□□□□□ -0.451e-8■■□□□ 13.7
DDX55Q8NHQ9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.334e-9■■□□□ 13.7
DDX55Q8NHQ9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.924e-9■■□□□ 13.7
DDX55Q8NHQ9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.684e-9■■□□□ 13.7
DDX55Q8NHQ9 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC9.95□□□□□ -0.825e-6■■□□□ 13.6
DDX55Q8NHQ9 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.345e-6■■□□□ 13.6
DDX55Q8NHQ9 DNPH1-204ENST00000509253 834 ntTSL 337.06■■■■□ 3.522e-13■■□□□ 13.6
DDX55Q8NHQ9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.042e-13■■□□□ 13.6
DDX55Q8NHQ9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC24.73■■□□□ 1.552e-13■■□□□ 13.6
DDX55Q8NHQ9 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.673e-18■■□□□ 13.6
DDX55Q8NHQ9 HMGB2-205ENST00000511316 1841 ntTSL 214.71□□□□□ -0.063e-18■■□□□ 13.6
DDX55Q8NHQ9 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.073e-18■■□□□ 13.6
DDX55Q8NHQ9 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.023e-18■■□□□ 13.6
DDX55Q8NHQ9 NSUN2-208ENST00000513888 1290 ntTSL 219■□□□□ 0.639e-9■■□□□ 13.6
DDX55Q8NHQ9 NSUN2-203ENST00000504374 3217 ntTSL 217.59■□□□□ 0.419e-9■■□□□ 13.6
DDX55Q8NHQ9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.319e-9■■□□□ 13.6
DDX55Q8NHQ9 NSUN2-205ENST00000505892 3558 ntTSL 1 (best)8.57□□□□□ -1.049e-9■■□□□ 13.6
DDX55Q8NHQ9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC24.26■■□□□ 1.474e-22■■□□□ 13.6
DDX55Q8NHQ9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.412e-8■■□□□ 13.6
DDX55Q8NHQ9 SLC2A4RG-203ENST00000474248 624 ntTSL 228.21■■■□□ 2.112e-8■■□□□ 13.6
DDX55Q8NHQ9 SLC2A4RG-205ENST00000485897 518 ntTSL 527.51■■□□□ 1.992e-8■■□□□ 13.6
DDX55Q8NHQ9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.41■■□□□ 1.662e-8■■□□□ 13.6
DDX55Q8NHQ9 CIRBP-209ENST00000586555 716 ntTSL 225.21■■□□□ 1.632e-8■■□□□ 13.6
DDX55Q8NHQ9 CIRBP-220ENST00000588917 1087 ntTSL 223.3■■□□□ 1.322e-8■■□□□ 13.6
DDX55Q8NHQ9 CIRBP-245ENST00000621399 1044 ntTSL 1 (best)22.26■■□□□ 1.152e-8■■□□□ 13.6
DDX55Q8NHQ9 CIRBP-227ENST00000590188 361 ntTSL 322.09■■□□□ 1.132e-8■■□□□ 13.6
DDX55Q8NHQ9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.45■□□□□ 0.862e-8■■□□□ 13.6
DDX55Q8NHQ9 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.777e-10■■□□□ 13.6
DDX55Q8NHQ9 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.9■□□□□ 0.463e-9■■□□□ 13.6
DDX55Q8NHQ9 SLC2A4RG-206ENST00000491109 637 ntTSL 217.64■□□□□ 0.412e-8■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.37■□□□□ 0.052e-8■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.37■□□□□ 0.052e-8■■□□□ 13.6
DDX55Q8NHQ9 GMNN-207ENST00000620958 1039 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.017e-10■■□□□ 13.6
DDX55Q8NHQ9 GMNN-202ENST00000356509 1133 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.047e-10■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC14.54□□□□□ -0.082e-8■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC13.65□□□□□ -0.222e-8■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-203ENST00000359980 2997 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.372e-8■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-206ENST00000393677 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.452e-8■■□□□ 13.6
DDX55Q8NHQ9 ZFYVE27-207ENST00000423811 3045 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.462e-8■■□□□ 13.6
DDX55Q8NHQ9 RELN-204ENST00000429186 891 ntTSL 56.43□□□□□ -1.382e-8■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.085e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-203ENST00000594844 593 ntTSL 426.36■■□□□ 1.811e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.98■■□□□ 1.755e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.43■■□□□ 1.185e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-202ENST00000544835 1292 ntTSL 1 (best)22.4■■□□□ 1.185e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-207ENST00000597547 574 ntTSL 320.63■□□□□ 0.891e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-211ENST00000601844 1548 ntTSL 520.61■□□□□ 0.895e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.625e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-208ENST00000597611 966 ntTSL 318.87■□□□□ 0.615e-21■■□□□ 13.6
DDX55Q8NHQ9 FKBP8-210ENST00000599540 1140 ntTSL 216.26■□□□□ 0.191e-21■■□□□ 13.6
DDX55Q8NHQ9 PIN1-202ENST00000380889 1670 ntTSL 1 (best)25.83■■□□□ 1.735e-7■■□□□ 13.6
DDX55Q8NHQ9 PIN1-210ENST00000591777 533 ntTSL 314.4□□□□□ -0.15e-7■■□□□ 13.6
DDX55Q8NHQ9 CFL1-206ENST00000527344 962 ntTSL 2 BASIC17.52■□□□□ 0.47e-26■■□□□ 13.6
DDX55Q8NHQ9 NEDD8-204ENST00000526430 286 ntTSL 313.8□□□□□ -0.26e-11■■□□□ 13.6
DDX55Q8NHQ9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.031e-7■■□□□ 13.6
DDX55Q8NHQ9 CYP27A1-205ENST00000494263 2566 ntTSL 218.71■□□□□ 0.591e-7■■□□□ 13.6
DDX55Q8NHQ9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.21■■■□□ 2.271e-6■■□□□ 13.6
DDX55Q8NHQ9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.751e-6■■□□□ 13.6
DDX55Q8NHQ9 RALY-209ENST00000489384 227 ntTSL 37.74□□□□□ -1.171e-6■■□□□ 13.6
DDX55Q8NHQ9 FXYD1-209ENST00000590462 620 ntTSL 29.64□□□□□ -0.877e-8■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-210ENST00000641115 1638 ntBASIC23.06■■□□□ 1.282e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-227ENST00000641811 1031 nt21.07■□□□□ 0.962e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-209ENST00000641074 1780 ntBASIC20.74■□□□□ 0.912e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-230ENST00000641927 1678 nt20.46■□□□□ 0.872e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-226ENST00000641756 2132 nt19.52■□□□□ 0.722e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.31■□□□□ 0.682e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.12■□□□□ 0.652e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-216ENST00000641375 2196 nt18.45■□□□□ 0.542e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-211ENST00000641213 2053 nt18.44■□□□□ 0.542e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-229ENST00000641891 2175 nt18.36■□□□□ 0.532e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.69■□□□□ 0.422e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-205ENST00000482968 1754 ntTSL 217.52■□□□□ 0.42e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-233ENST00000642021 2794 nt14.3□□□□□ -0.122e-7■■□□□ 13.6
DDX55Q8NHQ9 PHGDH-201ENST00000369407 3180 ntTSL 212.74□□□□□ -0.372e-7■■□□□ 13.6
DDX55Q8NHQ9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.51■□□□□ 0.231e-7■■□□□ 13.6
DDX55Q8NHQ9 DCXR-217ENST00000582613 617 ntTSL 232.01■■■□□ 2.711e-15■■□□□ 13.5
DDX55Q8NHQ9 DCXR-219ENST00000584318 284 ntTSL 518.65■□□□□ 0.581e-15■■□□□ 13.5
DDX55Q8NHQ9 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC14.22□□□□□ -0.131e-7■■□□□ 13.5
DDX55Q8NHQ9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.91■□□□□ 0.33e-6■■□□□ 13.5
DDX55Q8NHQ9 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.093e-6■■□□□ 13.5
DDX55Q8NHQ9 GDI1-206ENST00000465640 754 ntTSL 1 (best)26.88■■□□□ 1.898e-23■■□□□ 13.5
DDX55Q8NHQ9 MINK1-207ENST00000572330 5299 ntTSL 517.4■□□□□ 0.381e-7■■□□□ 13.5
DDX55Q8NHQ9 GDI1-205ENST00000460984 552 ntTSL 216.65■□□□□ 0.268e-23■■□□□ 13.5
DDX55Q8NHQ9 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC14.03□□□□□ -0.167e-8■■□□□ 13.5
DDX55Q8NHQ9 SUN2-202ENST00000405510 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.297e-8■■□□□ 13.5
DDX55Q8NHQ9 KEL-201ENST00000355265 2812 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.871e-7■■□□□ 13.5
DDX55Q8NHQ9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.162e-7■■□□□ 13.5
DDX55Q8NHQ9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.12e-7■■□□□ 13.5
DDX55Q8NHQ9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.042e-7■■□□□ 13.5
DDX55Q8NHQ9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.492e-6■■□□□ 13.5
DDX55Q8NHQ9 BAG6-258ENST00000464126 609 ntTSL 217.92■□□□□ 0.465e-12■■□□□ 13.5
Retrieved 100 of 15,504 protein–RNA pairs in 308.5 ms