Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NIPAL3Q6P499 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NIPAL3Q6P499 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.3■□□□□ 0.52
NIPAL3Q6P499 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NIPAL3Q6P499 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 MIR2861-201ENST00000636310 90 ntBASIC18.28■□□□□ 0.52
NIPAL3Q6P499 AC068338.2-201ENST00000563278 1430 ntBASIC18.28■□□□□ 0.52
NIPAL3Q6P499 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NIPAL3Q6P499 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 CDCA4P2-201ENST00000441182 718 ntBASIC18.27■□□□□ 0.52
NIPAL3Q6P499 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.27■□□□□ 0.52
NIPAL3Q6P499 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.27■□□□□ 0.51
NIPAL3Q6P499 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
NIPAL3Q6P499 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.27■□□□□ 0.51
NIPAL3Q6P499 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
NIPAL3Q6P499 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NIPAL3Q6P499 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.26■□□□□ 0.51
NIPAL3Q6P499 SMG8-203ENST00000578922 2178 ntBASIC18.25■□□□□ 0.51
NIPAL3Q6P499 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.25■□□□□ 0.51
NIPAL3Q6P499 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms