Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
KRT39Q6A163 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.75■■□□□ 1.07
KRT39Q6A163 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.75■■□□□ 1.07
KRT39Q6A163 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.75■■□□□ 1.07
KRT39Q6A163 AL109923.1-201ENST00000618799 583 ntBASIC21.75■■□□□ 1.07
KRT39Q6A163 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.75■■□□□ 1.07
KRT39Q6A163 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.75■■□□□ 1.07
KRT39Q6A163 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.75■■□□□ 1.07
KRT39Q6A163 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.75■■□□□ 1.07
KRT39Q6A163 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
KRT39Q6A163 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.74■■□□□ 1.07
KRT39Q6A163 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.74■■□□□ 1.07
KRT39Q6A163 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.74■■□□□ 1.07
KRT39Q6A163 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.74■■□□□ 1.07
KRT39Q6A163 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
KRT39Q6A163 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
KRT39Q6A163 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.73■■□□□ 1.07
KRT39Q6A163 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
KRT39Q6A163 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
KRT39Q6A163 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.73■■□□□ 1.07
KRT39Q6A163 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
KRT39Q6A163 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
KRT39Q6A163 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
KRT39Q6A163 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
KRT39Q6A163 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.73■■□□□ 1.07
KRT39Q6A163 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.73■■□□□ 1.07
KRT39Q6A163 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.73■■□□□ 1.07
KRT39Q6A163 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.73■■□□□ 1.07
KRT39Q6A163 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
KRT39Q6A163 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.73■■□□□ 1.07
KRT39Q6A163 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.73■■□□□ 1.07
KRT39Q6A163 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.73■■□□□ 1.07
KRT39Q6A163 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
KRT39Q6A163 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
KRT39Q6A163 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 DUSP5P2-201ENST00000426873 1033 ntBASIC21.72■■□□□ 1.07
KRT39Q6A163 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
KRT39Q6A163 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 MIR4758-201ENST00000577688 71 ntBASIC21.72■■□□□ 1.07
KRT39Q6A163 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.72■■□□□ 1.07
KRT39Q6A163 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.72■■□□□ 1.07
KRT39Q6A163 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
KRT39Q6A163 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.72■■□□□ 1.07
KRT39Q6A163 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT39Q6A163 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT39Q6A163 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
KRT39Q6A163 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT39Q6A163 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
KRT39Q6A163 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT39Q6A163 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT39Q6A163 BX119927.1-201ENST00000636596 1552 ntBASIC21.71■■□□□ 1.07
KRT39Q6A163 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT39Q6A163 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
KRT39Q6A163 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT39Q6A163 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
KRT39Q6A163 AC104771.1-201ENST00000603335 964 ntBASIC21.71■■□□□ 1.07
KRT39Q6A163 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT39Q6A163 AC112907.3-201ENST00000577781 2400 ntBASIC21.71■■□□□ 1.07
KRT39Q6A163 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
KRT39Q6A163 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
KRT39Q6A163 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT39Q6A163 KRT8P17-201ENST00000453110 1448 ntBASIC21.71■■□□□ 1.07
KRT39Q6A163 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT39Q6A163 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms