Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USF3Q68DE3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USF3Q68DE3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF3Q68DE3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USF3Q68DE3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.29■□□□□ 0.36
USF3Q68DE3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF3Q68DE3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.29■□□□□ 0.36
USF3Q68DE3 AL356652.1-201ENST00000615962 565 ntBASIC17.29■□□□□ 0.36
USF3Q68DE3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
USF3Q68DE3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USF3Q68DE3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF3Q68DE3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.29■□□□□ 0.36
USF3Q68DE3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USF3Q68DE3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USF3Q68DE3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USF3Q68DE3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USF3Q68DE3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USF3Q68DE3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.28■□□□□ 0.36
USF3Q68DE3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.28■□□□□ 0.36
USF3Q68DE3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.28■□□□□ 0.36
USF3Q68DE3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.28■□□□□ 0.36
USF3Q68DE3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.28■□□□□ 0.36
USF3Q68DE3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.28■□□□□ 0.36
USF3Q68DE3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
USF3Q68DE3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
USF3Q68DE3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.28■□□□□ 0.36
USF3Q68DE3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 AL355075.4-201ENST00000554988 638 ntBASIC17.28■□□□□ 0.36
USF3Q68DE3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USF3Q68DE3 LINC01023-201ENST00000606054 436 ntBASIC17.28■□□□□ 0.36
USF3Q68DE3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
USF3Q68DE3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USF3Q68DE3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USF3Q68DE3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
USF3Q68DE3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USF3Q68DE3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
USF3Q68DE3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.27■□□□□ 0.36
USF3Q68DE3 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 MIR1224-201ENST00000408193 85 ntBASIC17.27■□□□□ 0.36
USF3Q68DE3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.27■□□□□ 0.36
USF3Q68DE3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
USF3Q68DE3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF3Q68DE3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
USF3Q68DE3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
USF3Q68DE3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
USF3Q68DE3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USF3Q68DE3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.27■□□□□ 0.35
USF3Q68DE3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.27■□□□□ 0.35
USF3Q68DE3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.27■□□□□ 0.35
USF3Q68DE3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
USF3Q68DE3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.27■□□□□ 0.35
USF3Q68DE3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.27■□□□□ 0.35
USF3Q68DE3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USF3Q68DE3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.26■□□□□ 0.35
USF3Q68DE3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.26■□□□□ 0.35
USF3Q68DE3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USF3Q68DE3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.26■□□□□ 0.35
USF3Q68DE3 AC233702.5-201ENST00000584107 538 ntBASIC17.26■□□□□ 0.35
USF3Q68DE3 AL135905.2-201ENST00000584934 1404 ntBASIC17.26■□□□□ 0.35
USF3Q68DE3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF3Q68DE3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
USF3Q68DE3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USF3Q68DE3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms