Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 AL162377.1-201ENST00000618844 1793 ntBASIC17.97■□□□□ 0.47
CLRN1P58418 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.97■□□□□ 0.47
CLRN1P58418 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.97■□□□□ 0.47
CLRN1P58418 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.97■□□□□ 0.47
CLRN1P58418 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CLRN1P58418 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
CLRN1P58418 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.96■□□□□ 0.47
CLRN1P58418 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CLRN1P58418 KRT18P68-201ENST00000392293 1000 ntBASIC17.96■□□□□ 0.47
CLRN1P58418 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.96■□□□□ 0.47
CLRN1P58418 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.96■□□□□ 0.47
CLRN1P58418 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.96■□□□□ 0.47
CLRN1P58418 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN1P58418 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CLRN1P58418 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
CLRN1P58418 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CLRN1P58418 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.95■□□□□ 0.46
CLRN1P58418 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
CLRN1P58418 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 AL391422.3-201ENST00000603791 2761 ntBASIC17.95■□□□□ 0.46
CLRN1P58418 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 AC026185.1-201ENST00000445748 174 ntBASIC17.95■□□□□ 0.46
CLRN1P58418 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.95■□□□□ 0.46
CLRN1P58418 CYP2T3P-201ENST00000601990 817 ntBASIC17.95■□□□□ 0.46
CLRN1P58418 AC105020.6-201ENST00000621523 1217 ntBASIC17.95■□□□□ 0.46
CLRN1P58418 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
CLRN1P58418 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN1P58418 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
CLRN1P58418 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.94■□□□□ 0.46
CLRN1P58418 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLRN1P58418 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.94■□□□□ 0.46
CLRN1P58418 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.94■□□□□ 0.46
CLRN1P58418 AL355472.2-201ENST00000422958 438 ntBASIC17.94■□□□□ 0.46
CLRN1P58418 CDCA4P2-201ENST00000441182 718 ntBASIC17.94■□□□□ 0.46
CLRN1P58418 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.94■□□□□ 0.46
CLRN1P58418 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.94■□□□□ 0.46
CLRN1P58418 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 AC010980.2-201ENST00000587099 1412 ntBASIC17.94■□□□□ 0.46
CLRN1P58418 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.94■□□□□ 0.46
CLRN1P58418 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLRN1P58418 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLRN1P58418 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms