Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 AC026185.1-201ENST00000445748 174 ntBASIC20.94■□□□□ 0.94
CDH6P55285 AC093787.1-201ENST00000450396 207 ntBASIC20.94■□□□□ 0.94
CDH6P55285 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.94■□□□□ 0.94
CDH6P55285 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CDH6P55285 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.94■□□□□ 0.94
CDH6P55285 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CDH6P55285 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.94■□□□□ 0.94
CDH6P55285 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDH6P55285 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CDH6P55285 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH6P55285 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CDH6P55285 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CDH6P55285 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH6P55285 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH6P55285 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH6P55285 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH6P55285 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 RAP2CP1-201ENST00000605103 478 ntBASIC20.93■□□□□ 0.94
CDH6P55285 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CDH6P55285 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CDH6P55285 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH6P55285 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDH6P55285 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CDH6P55285 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH6P55285 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 TCF3P1-201ENST00000423021 1937 ntBASIC20.92■□□□□ 0.94
CDH6P55285 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CDH6P55285 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.92■□□□□ 0.94
CDH6P55285 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CDH6P55285 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.92■□□□□ 0.94
CDH6P55285 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.92■□□□□ 0.94
CDH6P55285 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH6P55285 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CDH6P55285 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.91■□□□□ 0.94
CDH6P55285 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 AL512625.2-201ENST00000417533 625 ntBASIC20.91■□□□□ 0.94
CDH6P55285 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.91■□□□□ 0.94
CDH6P55285 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.91■□□□□ 0.94
CDH6P55285 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
CDH6P55285 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.91■□□□□ 0.94
CDH6P55285 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDH6P55285 AFG3L1P-217ENST00000557444 2447 ntBASIC20.9■□□□□ 0.94
CDH6P55285 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.9■□□□□ 0.94
CDH6P55285 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CDH6P55285 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CDH6P55285 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.9■□□□□ 0.94
CDH6P55285 AL050303.2-201ENST00000619798 666 ntBASIC20.9■□□□□ 0.94
CDH6P55285 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
CDH6P55285 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH6P55285 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDH6P55285 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.89■□□□□ 0.94
CDH6P55285 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDH6P55285 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH6P55285 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.89■□□□□ 0.93
CDH6P55285 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH6P55285 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH6P55285 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH6P55285 MIR663A-201ENST00000385250 93 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms