Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.37■■□□□ 1.33
HMGCS2P54868 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.36■■□□□ 1.33
HMGCS2P54868 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
HMGCS2P54868 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
HMGCS2P54868 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 MMP23A-201ENST00000234610 1017 ntBASIC23.36■■□□□ 1.33
HMGCS2P54868 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 AC073195.1-201ENST00000607241 877 ntBASIC23.36■■□□□ 1.33
HMGCS2P54868 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
HMGCS2P54868 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
HMGCS2P54868 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGCS2P54868 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
HMGCS2P54868 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
HMGCS2P54868 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
HMGCS2P54868 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGCS2P54868 AL049796.1-201ENST00000565336 1766 ntBASIC23.35■■□□□ 1.33
HMGCS2P54868 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGCS2P54868 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGCS2P54868 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC23.35■■□□□ 1.33
HMGCS2P54868 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC23.35■■□□□ 1.33
HMGCS2P54868 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGCS2P54868 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC23.35■■□□□ 1.33
HMGCS2P54868 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGCS2P54868 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGCS2P54868 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 PTBP1P-201ENST00000554374 1601 ntBASIC23.34■■□□□ 1.33
HMGCS2P54868 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC23.34■■□□□ 1.33
HMGCS2P54868 AL117328.2-201ENST00000624617 1940 ntBASIC23.34■■□□□ 1.33
HMGCS2P54868 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
HMGCS2P54868 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
HMGCS2P54868 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.34■■□□□ 1.33
HMGCS2P54868 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 AC004264.1-201ENST00000608354 794 ntBASIC23.34■■□□□ 1.33
HMGCS2P54868 DECR2-212ENST00000627716 352 ntTSL 2 BASIC23.34■■□□□ 1.33
HMGCS2P54868 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.34■■□□□ 1.33
HMGCS2P54868 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGCS2P54868 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.33
HMGCS2P54868 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HMGCS2P54868 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.33
HMGCS2P54868 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGCS2P54868 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGCS2P54868 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC23.33■■□□□ 1.33
HMGCS2P54868 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HMGCS2P54868 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGCS2P54868 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC23.33■■□□□ 1.33
HMGCS2P54868 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGCS2P54868 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.33■■□□□ 1.33
HMGCS2P54868 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC23.33■■□□□ 1.33
HMGCS2P54868 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGCS2P54868 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
HMGCS2P54868 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.33■■□□□ 1.32
HMGCS2P54868 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
HMGCS2P54868 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
HMGCS2P54868 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.32■■□□□ 1.32
HMGCS2P54868 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
HMGCS2P54868 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC23.32■■□□□ 1.32
HMGCS2P54868 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC23.32■■□□□ 1.32
HMGCS2P54868 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGCS2P54868 EP400NL-214ENST00000641289 2402 ntBASIC23.31■■□□□ 1.32
HMGCS2P54868 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 RBM17P1-201ENST00000453646 1190 ntBASIC23.31■■□□□ 1.32
HMGCS2P54868 AP002982.1-201ENST00000492365 877 ntBASIC23.31■■□□□ 1.32
HMGCS2P54868 NUDT16P1-203ENST00000513809 620 ntBASIC23.31■■□□□ 1.32
HMGCS2P54868 RN7SL850P-201ENST00000579959 291 ntBASIC23.31■■□□□ 1.32
HMGCS2P54868 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC23.31■■□□□ 1.32
HMGCS2P54868 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
HMGCS2P54868 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
HMGCS2P54868 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGCS2P54868 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.31■■□□□ 1.32
HMGCS2P54868 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
HMGCS2P54868 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.3■■□□□ 1.32
HMGCS2P54868 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
HMGCS2P54868 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGCS2P54868 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms