Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 AL355472.2-201ENST00000422958 438 ntBASIC19.5■□□□□ 0.71
HNF4AP41235 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.5■□□□□ 0.71
HNF4AP41235 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.5■□□□□ 0.71
HNF4AP41235 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 AC099778.1-201ENST00000568593 1911 ntBASIC19.5■□□□□ 0.71
HNF4AP41235 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.49■□□□□ 0.71
HNF4AP41235 DPP3P2-201ENST00000416030 1696 ntBASIC19.49■□□□□ 0.71
HNF4AP41235 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.49■□□□□ 0.71
HNF4AP41235 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 SMG8-203ENST00000578922 2178 ntBASIC19.49■□□□□ 0.71
HNF4AP41235 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HNF4AP41235 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.49■□□□□ 0.71
HNF4AP41235 AF201337.1-201ENST00000520239 748 ntBASIC19.49■□□□□ 0.71
HNF4AP41235 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.49■□□□□ 0.71
HNF4AP41235 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.49■□□□□ 0.71
HNF4AP41235 OR10C1-204ENST00000622521 1039 ntBASIC19.49■□□□□ 0.71
HNF4AP41235 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.49■□□□□ 0.71
HNF4AP41235 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.49■□□□□ 0.71
HNF4AP41235 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.49■□□□□ 0.71
HNF4AP41235 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.49■□□□□ 0.71
HNF4AP41235 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.49■□□□□ 0.71
HNF4AP41235 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HNF4AP41235 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HNF4AP41235 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.48■□□□□ 0.71
HNF4AP41235 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.48■□□□□ 0.71
HNF4AP41235 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.48■□□□□ 0.71
HNF4AP41235 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.48■□□□□ 0.71
HNF4AP41235 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.48■□□□□ 0.71
HNF4AP41235 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HNF4AP41235 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.48■□□□□ 0.71
HNF4AP41235 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HNF4AP41235 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
HNF4AP41235 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.47■□□□□ 0.71
HNF4AP41235 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 AC083906.2-201ENST00000511578 360 ntBASIC19.47■□□□□ 0.71
HNF4AP41235 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.47■□□□□ 0.71
HNF4AP41235 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
HNF4AP41235 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.47■□□□□ 0.71
HNF4AP41235 AC010980.2-201ENST00000587099 1412 ntBASIC19.47■□□□□ 0.71
HNF4AP41235 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HNF4AP41235 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.47■□□□□ 0.71
HNF4AP41235 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
HNF4AP41235 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.46■□□□□ 0.71
HNF4AP41235 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.46■□□□□ 0.71
HNF4AP41235 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.46■□□□□ 0.71
HNF4AP41235 KRT18P68-201ENST00000392293 1000 ntBASIC19.46■□□□□ 0.71
HNF4AP41235 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.46■□□□□ 0.71
HNF4AP41235 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.46■□□□□ 0.71
HNF4AP41235 AC133552.2-202ENST00000575694 574 ntBASIC19.46■□□□□ 0.71
HNF4AP41235 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.46■□□□□ 0.71
HNF4AP41235 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.46■□□□□ 0.71
HNF4AP41235 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.46■□□□□ 0.71
HNF4AP41235 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.46■□□□□ 0.71
HNF4AP41235 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.46■□□□□ 0.71
HNF4AP41235 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HNF4AP41235 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms