Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.34■□□□□ 0.85
HADHAP40939 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.34■□□□□ 0.85
HADHAP40939 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HADHAP40939 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HADHAP40939 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.34■□□□□ 0.85
HADHAP40939 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.34■□□□□ 0.85
HADHAP40939 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HADHAP40939 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
HADHAP40939 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HADHAP40939 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.34■□□□□ 0.85
HADHAP40939 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HADHAP40939 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.34■□□□□ 0.85
HADHAP40939 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
HADHAP40939 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HADHAP40939 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.33■□□□□ 0.85
HADHAP40939 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.33■□□□□ 0.85
HADHAP40939 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HADHAP40939 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
HADHAP40939 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
HADHAP40939 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HADHAP40939 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
HADHAP40939 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.32■□□□□ 0.84
HADHAP40939 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HADHAP40939 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
HADHAP40939 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.32■□□□□ 0.84
HADHAP40939 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.32■□□□□ 0.84
HADHAP40939 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.32■□□□□ 0.84
HADHAP40939 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HADHAP40939 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.32■□□□□ 0.84
HADHAP40939 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HADHAP40939 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.32■□□□□ 0.84
HADHAP40939 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HADHAP40939 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HADHAP40939 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
HADHAP40939 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HADHAP40939 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.31■□□□□ 0.84
HADHAP40939 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 AC010980.2-201ENST00000587099 1412 ntBASIC20.31■□□□□ 0.84
HADHAP40939 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 MIR663A-201ENST00000385250 93 ntBASIC20.31■□□□□ 0.84
HADHAP40939 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.31■□□□□ 0.84
HADHAP40939 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HADHAP40939 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.31■□□□□ 0.84
HADHAP40939 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.3■□□□□ 0.84
HADHAP40939 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 KRT18P68-201ENST00000392293 1000 ntBASIC20.3■□□□□ 0.84
HADHAP40939 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.3■□□□□ 0.84
HADHAP40939 CROCCP5-201ENST00000436658 830 ntBASIC20.3■□□□□ 0.84
HADHAP40939 AF201337.1-201ENST00000520239 748 ntBASIC20.3■□□□□ 0.84
HADHAP40939 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HADHAP40939 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
HADHAP40939 CYP2T3P-201ENST00000601990 817 ntBASIC20.3■□□□□ 0.84
HADHAP40939 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.3■□□□□ 0.84
HADHAP40939 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.3■□□□□ 0.84
HADHAP40939 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.3■□□□□ 0.84
HADHAP40939 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HADHAP40939 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HADHAP40939 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HADHAP40939 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HADHAP40939 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HADHAP40939 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HADHAP40939 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
HADHAP40939 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HADHAP40939 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.29■□□□□ 0.84
HADHAP40939 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.29■□□□□ 0.84
HADHAP40939 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms