Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PTPN4P29074 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PTPN4P29074 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.14■□□□□ 0.82
PTPN4P29074 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
PTPN4P29074 TNXA-203ENST00000507684 2038 ntBASIC20.14■□□□□ 0.81
PTPN4P29074 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN4P29074 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PTPN4P29074 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.14■□□□□ 0.81
PTPN4P29074 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.14■□□□□ 0.81
PTPN4P29074 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PTPN4P29074 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.14■□□□□ 0.81
PTPN4P29074 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN4P29074 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN4P29074 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.14■□□□□ 0.81
PTPN4P29074 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.14■□□□□ 0.81
PTPN4P29074 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN4P29074 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
PTPN4P29074 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN4P29074 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PTPN4P29074 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.13■□□□□ 0.81
PTPN4P29074 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
PTPN4P29074 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.13■□□□□ 0.81
PTPN4P29074 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.13■□□□□ 0.81
PTPN4P29074 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 DUX4L16-201ENST00000555130 1264 ntBASIC20.13■□□□□ 0.81
PTPN4P29074 AL034346.1-201ENST00000568244 1277 ntBASIC20.13■□□□□ 0.81
PTPN4P29074 MYCNOS-205ENST00000641950 531 ntBASIC20.13■□□□□ 0.81
PTPN4P29074 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.13■□□□□ 0.81
PTPN4P29074 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
PTPN4P29074 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN4P29074 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN4P29074 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN4P29074 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN4P29074 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.12■□□□□ 0.81
PTPN4P29074 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN4P29074 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN4P29074 AC007322.1-201ENST00000426983 750 ntBASIC20.12■□□□□ 0.81
PTPN4P29074 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN4P29074 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.12■□□□□ 0.81
PTPN4P29074 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.12■□□□□ 0.81
PTPN4P29074 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PTPN4P29074 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PTPN4P29074 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PTPN4P29074 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PTPN4P29074 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.11■□□□□ 0.81
PTPN4P29074 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN4P29074 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN4P29074 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN4P29074 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.11■□□□□ 0.81
PTPN4P29074 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.11■□□□□ 0.81
PTPN4P29074 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.11■□□□□ 0.81
PTPN4P29074 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.11■□□□□ 0.81
PTPN4P29074 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PTPN4P29074 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.11■□□□□ 0.81
PTPN4P29074 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN4P29074 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN4P29074 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.11■□□□□ 0.81
PTPN4P29074 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN4P29074 TCF3P1-201ENST00000423021 1937 ntBASIC20.1■□□□□ 0.81
PTPN4P29074 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN4P29074 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN4P29074 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.1■□□□□ 0.81
PTPN4P29074 AC138907.5-202ENST00000569484 235 ntBASIC20.1■□□□□ 0.81
PTPN4P29074 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PTPN4P29074 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN4P29074 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN4P29074 AL121832.2-201ENST00000610979 668 ntBASIC20.1■□□□□ 0.81
PTPN4P29074 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PTPN4P29074 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN4P29074 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
PTPN4P29074 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.09■□□□□ 0.81
PTPN4P29074 FP700111.2-201ENST00000619190 1892 ntBASIC20.09■□□□□ 0.81
PTPN4P29074 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 AC004408.2-201ENST00000623613 2777 ntBASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms