Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.02■□□□□ 0.8
MSH3P20585 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
MSH3P20585 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MSH3P20585 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSH3P20585 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSH3P20585 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSH3P20585 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSH3P20585 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.02■□□□□ 0.79
MSH3P20585 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
MSH3P20585 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH3P20585 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
MSH3P20585 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH3P20585 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH3P20585 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
MSH3P20585 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH3P20585 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
MSH3P20585 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH3P20585 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH3P20585 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20■□□□□ 0.79
MSH3P20585 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20■□□□□ 0.79
MSH3P20585 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20■□□□□ 0.79
MSH3P20585 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
MSH3P20585 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
MSH3P20585 APTR-205ENST00000447009 902 ntTSL 2 BASIC20■□□□□ 0.79
MSH3P20585 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20■□□□□ 0.79
MSH3P20585 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20■□□□□ 0.79
MSH3P20585 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MSH3P20585 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH3P20585 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH3P20585 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH3P20585 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH3P20585 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH3P20585 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.99■□□□□ 0.79
MSH3P20585 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.99■□□□□ 0.79
MSH3P20585 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.99■□□□□ 0.79
MSH3P20585 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
MSH3P20585 AC073314.1-201ENST00000568729 2216 ntBASIC19.99■□□□□ 0.79
MSH3P20585 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH3P20585 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH3P20585 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH3P20585 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
MSH3P20585 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.98■□□□□ 0.79
MSH3P20585 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.98■□□□□ 0.79
MSH3P20585 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
MSH3P20585 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.98■□□□□ 0.79
MSH3P20585 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.98■□□□□ 0.79
MSH3P20585 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.98■□□□□ 0.79
MSH3P20585 MYC-209ENST00000641252 345 ntBASIC19.98■□□□□ 0.79
MSH3P20585 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.98■□□□□ 0.79
MSH3P20585 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
MSH3P20585 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MSH3P20585 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSH3P20585 AC020907.5-201ENST00000624372 1936 ntBASIC19.98■□□□□ 0.79
MSH3P20585 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms