Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
APOBP04114 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC12.68□□□□□ -0.38
APOBP04114 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
APOBP04114 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC12.67□□□□□ -0.38
APOBP04114 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC12.67□□□□□ -0.38
APOBP04114 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC12.67□□□□□ -0.38
APOBP04114 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
APOBP04114 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC12.67□□□□□ -0.38
APOBP04114 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 AK4P3-201ENST00000418260 669 ntBASIC12.67□□□□□ -0.38
APOBP04114 AP000347.1-202ENST00000435868 847 ntBASIC12.67□□□□□ -0.38
APOBP04114 CD320-202ENST00000537716 1119 ntTSL 2 BASIC12.67□□□□□ -0.38
APOBP04114 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC12.67□□□□□ -0.38
APOBP04114 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC12.67□□□□□ -0.38
APOBP04114 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
APOBP04114 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
APOBP04114 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
APOBP04114 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
APOBP04114 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
APOBP04114 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC12.67□□□□□ -0.38
APOBP04114 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 DBP-204ENST00000599385 709 ntTSL 3 BASIC12.67□□□□□ -0.38
APOBP04114 CR392000.1-201ENST00000624770 1228 ntBASIC12.67□□□□□ -0.38
APOBP04114 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
APOBP04114 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC12.67□□□□□ -0.38
APOBP04114 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC12.66□□□□□ -0.38
APOBP04114 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
APOBP04114 AL031985.4-201ENST00000642138 673 ntBASIC12.66□□□□□ -0.38
APOBP04114 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC12.66□□□□□ -0.38
APOBP04114 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
APOBP04114 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC12.66□□□□□ -0.38
APOBP04114 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
APOBP04114 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
APOBP04114 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
APOBP04114 HCG4P8-203ENST00000443049 980 ntBASIC12.66□□□□□ -0.38
APOBP04114 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.66□□□□□ -0.38
APOBP04114 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC12.66□□□□□ -0.38
APOBP04114 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.66□□□□□ -0.38
APOBP04114 C9orf163-202ENST00000624034 2573 ntBASIC12.66□□□□□ -0.38
APOBP04114 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
APOBP04114 AC127496.7-201ENST00000625110 1798 ntBASIC12.66□□□□□ -0.38
APOBP04114 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
APOBP04114 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.66□□□□□ -0.38
APOBP04114 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC12.66□□□□□ -0.38
APOBP04114 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC12.66□□□□□ -0.38
APOBP04114 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC12.65□□□□□ -0.38
APOBP04114 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC12.65□□□□□ -0.38
APOBP04114 AL358472.4-201ENST00000633140 710 ntBASIC12.65□□□□□ -0.38
APOBP04114 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC12.65□□□□□ -0.38
APOBP04114 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
APOBP04114 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC12.65□□□□□ -0.38
APOBP04114 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC12.65□□□□□ -0.38
APOBP04114 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 AC093458.2-201ENST00000623150 629 ntBASIC12.65□□□□□ -0.38
APOBP04114 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
APOBP04114 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC12.65□□□□□ -0.39
APOBP04114 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.39
APOBP04114 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC12.65□□□□□ -0.39
APOBP04114 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC12.64□□□□□ -0.39
APOBP04114 AC005332.1-201ENST00000577698 1310 ntBASIC12.64□□□□□ -0.39
APOBP04114 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
APOBP04114 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
APOBP04114 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
APOBP04114 CLEC4GP1-201ENST00000596555 870 ntBASIC12.64□□□□□ -0.39
APOBP04114 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
APOBP04114 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
APOBP04114 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
APOBP04114 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms