Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.73■□□□□ 0.75
SDC3O75056 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 KRT18P21-201ENST00000515767 1272 ntBASIC19.73■□□□□ 0.75
SDC3O75056 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.73■□□□□ 0.75
SDC3O75056 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 MIR2861-201ENST00000636310 90 ntBASIC19.73■□□□□ 0.75
SDC3O75056 KRT8P36-201ENST00000489121 1440 ntBASIC19.73■□□□□ 0.75
SDC3O75056 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.73■□□□□ 0.75
SDC3O75056 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.73■□□□□ 0.75
SDC3O75056 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SDC3O75056 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SDC3O75056 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.72■□□□□ 0.75
SDC3O75056 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.72■□□□□ 0.75
SDC3O75056 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.72■□□□□ 0.75
SDC3O75056 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
SDC3O75056 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.72■□□□□ 0.75
SDC3O75056 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SDC3O75056 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SDC3O75056 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC3O75056 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC3O75056 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC3O75056 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.71■□□□□ 0.75
SDC3O75056 FAM210CP-201ENST00000445714 574 ntBASIC19.71■□□□□ 0.75
SDC3O75056 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.71■□□□□ 0.75
SDC3O75056 AL355075.4-201ENST00000554988 638 ntBASIC19.71■□□□□ 0.75
SDC3O75056 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.71■□□□□ 0.75
SDC3O75056 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.71■□□□□ 0.75
SDC3O75056 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC3O75056 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.71■□□□□ 0.75
SDC3O75056 AC133561.5-201ENST00000635547 218 ntBASIC19.71■□□□□ 0.75
SDC3O75056 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SDC3O75056 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SDC3O75056 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SDC3O75056 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SDC3O75056 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SDC3O75056 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.7■□□□□ 0.74
SDC3O75056 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.7■□□□□ 0.74
SDC3O75056 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.7■□□□□ 0.74
SDC3O75056 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.7■□□□□ 0.74
SDC3O75056 MIR1224-201ENST00000408193 85 ntBASIC19.7■□□□□ 0.74
SDC3O75056 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.7■□□□□ 0.74
SDC3O75056 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SDC3O75056 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SDC3O75056 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC3O75056 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC3O75056 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.7■□□□□ 0.74
SDC3O75056 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SDC3O75056 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.69■□□□□ 0.74
SDC3O75056 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 AC121338.2-201ENST00000622535 1744 ntBASIC19.69■□□□□ 0.74
SDC3O75056 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SDC3O75056 AC087499.1-201ENST00000418141 1075 ntBASIC19.69■□□□□ 0.74
SDC3O75056 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.69■□□□□ 0.74
SDC3O75056 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.69■□□□□ 0.74
SDC3O75056 AC023632.3-201ENST00000521633 145 ntBASIC19.69■□□□□ 0.74
SDC3O75056 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.69■□□□□ 0.74
SDC3O75056 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.69■□□□□ 0.74
SDC3O75056 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms