Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
HOXC11O43248 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.57■□□□□ 0.88
HOXC11O43248 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC11O43248 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 HLA-G-202ENST00000376815 851 ntBASIC20.57■□□□□ 0.88
HOXC11O43248 HLA-G-203ENST00000376818 1127 ntBASIC20.57■□□□□ 0.88
HOXC11O43248 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
HOXC11O43248 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
HOXC11O43248 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.57■□□□□ 0.88
HOXC11O43248 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HOXC11O43248 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.57■□□□□ 0.88
HOXC11O43248 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 AC124283.5-201ENST00000624661 1809 ntBASIC20.57■□□□□ 0.88
HOXC11O43248 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HOXC11O43248 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC11O43248 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.56■□□□□ 0.88
HOXC11O43248 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.56■□□□□ 0.88
HOXC11O43248 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.56■□□□□ 0.88
HOXC11O43248 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
HOXC11O43248 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.56■□□□□ 0.88
HOXC11O43248 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.56■□□□□ 0.88
HOXC11O43248 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.56■□□□□ 0.88
HOXC11O43248 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HOXC11O43248 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HOXC11O43248 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
HOXC11O43248 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC11O43248 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HOXC11O43248 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC11O43248 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC11O43248 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HOXC11O43248 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 AL121603.2-201ENST00000557373 2117 ntBASIC20.55■□□□□ 0.88
HOXC11O43248 AL031963.3-201ENST00000606441 850 ntBASIC20.55■□□□□ 0.88
HOXC11O43248 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC11O43248 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HOXC11O43248 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC11O43248 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC11O43248 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HOXC11O43248 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC11O43248 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC11O43248 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC11O43248 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HOXC11O43248 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HOXC11O43248 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.54■□□□□ 0.88
HOXC11O43248 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC11O43248 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.54■□□□□ 0.88
HOXC11O43248 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC11O43248 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.54■□□□□ 0.88
HOXC11O43248 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC11O43248 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC11O43248 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC11O43248 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC11O43248 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 KRT8P20-201ENST00000423953 1409 ntBASIC20.53■□□□□ 0.88
HOXC11O43248 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
HOXC11O43248 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC11O43248 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 TSPY7P-201ENST00000431358 1114 ntBASIC20.53■□□□□ 0.88
HOXC11O43248 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.53■□□□□ 0.88
HOXC11O43248 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms