Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1AO00555 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1AO00555 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.17■□□□□ 0.66
CACNA1AO00555 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.17■□□□□ 0.66
CACNA1AO00555 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 MIR1233-2-201ENST00000408138 82 ntBASIC19.17■□□□□ 0.66
CACNA1AO00555 MIR1233-1-201ENST00000408722 82 ntBASIC19.17■□□□□ 0.66
CACNA1AO00555 AC092119.3-201ENST00000612618 583 ntBASIC19.17■□□□□ 0.66
CACNA1AO00555 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.17■□□□□ 0.66
CACNA1AO00555 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.17■□□□□ 0.66
CACNA1AO00555 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CACNA1AO00555 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CACNA1AO00555 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.17■□□□□ 0.66
CACNA1AO00555 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.17■□□□□ 0.66
CACNA1AO00555 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.17■□□□□ 0.66
CACNA1AO00555 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1AO00555 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
CACNA1AO00555 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1AO00555 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.16■□□□□ 0.66
CACNA1AO00555 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.16■□□□□ 0.66
CACNA1AO00555 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.16■□□□□ 0.66
CACNA1AO00555 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.16■□□□□ 0.66
CACNA1AO00555 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1AO00555 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CACNA1AO00555 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1AO00555 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.16■□□□□ 0.66
CACNA1AO00555 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
CACNA1AO00555 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.15■□□□□ 0.66
CACNA1AO00555 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1AO00555 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1AO00555 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CACNA1AO00555 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.15■□□□□ 0.66
CACNA1AO00555 CCR12P-201ENST00000446203 998 ntBASIC19.15■□□□□ 0.66
CACNA1AO00555 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.15■□□□□ 0.66
CACNA1AO00555 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.15■□□□□ 0.66
CACNA1AO00555 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.15■□□□□ 0.66
CACNA1AO00555 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
CACNA1AO00555 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1AO00555 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1AO00555 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1AO00555 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.15■□□□□ 0.66
CACNA1AO00555 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.15■□□□□ 0.66
CACNA1AO00555 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CACNA1AO00555 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1AO00555 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CACNA1AO00555 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CACNA1AO00555 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.14■□□□□ 0.66
CACNA1AO00555 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 PRSS44-201ENST00000515154 1146 ntBASIC19.14■□□□□ 0.65
CACNA1AO00555 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 AL441883.1-201ENST00000566170 1045 ntBASIC19.14■□□□□ 0.65
CACNA1AO00555 AC092338.2-201ENST00000568827 1415 ntBASIC19.14■□□□□ 0.65
CACNA1AO00555 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.14■□□□□ 0.65
CACNA1AO00555 BX640515.1-201ENST00000617215 977 ntBASIC19.14■□□□□ 0.65
CACNA1AO00555 AC010653.2-201ENST00000623505 997 ntBASIC19.14■□□□□ 0.65
CACNA1AO00555 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CACNA1AO00555 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CACNA1AO00555 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.14■□□□□ 0.65
CACNA1AO00555 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
CACNA1AO00555 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CACNA1AO00555 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CACNA1AO00555 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.13■□□□□ 0.65
CACNA1AO00555 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.13■□□□□ 0.65
CACNA1AO00555 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.13■□□□□ 0.65
CACNA1AO00555 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.13■□□□□ 0.65
CACNA1AO00555 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.13■□□□□ 0.65
CACNA1AO00555 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.13■□□□□ 0.65
CACNA1AO00555 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CACNA1AO00555 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CACNA1AO00555 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CACNA1AO00555 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CACNA1AO00555 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CACNA1AO00555 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CACNA1AO00555 AC004812.2-201ENST00000611079 2094 ntBASIC19.13■□□□□ 0.65
CACNA1AO00555 SLC25A1P2-201ENST00000430693 912 ntBASIC19.13■□□□□ 0.65
CACNA1AO00555 AC116562.4-202ENST00000641738 218 ntBASIC19.13■□□□□ 0.65
CACNA1AO00555 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms