Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.47■□□□□ 0.87
TCRBV7S3A2A0A539 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 AC007322.4-201ENST00000509611 723 ntBASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TCRBV7S3A2A0A539 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 CNN2P6-201ENST00000439038 900 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC137761.2-201ENST00000561729 223 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC145350.3-201ENST00000569033 163 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC011767.1-201ENST00000617410 1153 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC013268.1-206ENST00000638368 961 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 AC112229.1-201ENST00000639295 961 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 PTBP1P-201ENST00000554374 1601 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 TMEM179-206ENST00000616017 1645 ntBASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.45■□□□□ 0.86
TCRBV7S3A2A0A539 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TCRBV7S3A2A0A539 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 AC087289.5-201ENST00000586076 3175 ntBASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 PGM5P4-201ENST00000421970 445 ntBASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 DUX4L16-201ENST00000555130 1264 ntBASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TCRBV7S3A2A0A539 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TCRBV7S3A2A0A539 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TCRBV7S3A2A0A539 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.42■□□□□ 0.86
TCRBV7S3A2A0A539 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TCRBV7S3A2A0A539 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TCRBV7S3A2A0A539 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
TCRBV7S3A2A0A539 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms