Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 AP004607.4-201ENST00000530158 1459 ntBASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USH1CQ9Y6N9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.02■□□□□ 0.79
USH1CQ9Y6N9 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.02■□□□□ 0.79
USH1CQ9Y6N9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USH1CQ9Y6N9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 AC061975.6-201ENST00000579045 1553 ntBASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 IGHV3-19-201ENST00000521488 291 ntBASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 AC093484.2-201ENST00000580996 2166 ntBASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USH1CQ9Y6N9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 AC233992.3-201ENST00000607491 485 ntBASIC20■□□□□ 0.79
USH1CQ9Y6N9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20■□□□□ 0.79
USH1CQ9Y6N9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20■□□□□ 0.79
USH1CQ9Y6N9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 TMEM179-206ENST00000616017 1645 ntBASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 AC126544.1-201ENST00000580842 1059 ntBASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USH1CQ9Y6N9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 AC093503.3-201ENST00000624917 2352 ntBASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
USH1CQ9Y6N9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms