Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.34■■□□□ 1.33
CTDP1Q9Y5B0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 KRASP1-201ENST00000407852 552 ntBASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
CTDP1Q9Y5B0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CTDP1Q9Y5B0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.33■■□□□ 1.32
CTDP1Q9Y5B0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CTDP1Q9Y5B0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.33■■□□□ 1.32
CTDP1Q9Y5B0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CTDP1Q9Y5B0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTDP1Q9Y5B0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 AC124016.1-201ENST00000609552 612 ntBASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.31■■□□□ 1.32
CTDP1Q9Y5B0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 AC023632.3-201ENST00000521633 145 ntBASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 Z99916.2-201ENST00000604037 246 ntBASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 AC110285.5-201ENST00000611501 352 ntBASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.3■■□□□ 1.32
CTDP1Q9Y5B0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CTDP1Q9Y5B0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC23.28■■□□□ 1.32
CTDP1Q9Y5B0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms