Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN1Q9P244 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN1Q9P244 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN1Q9P244 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.54■□□□□ 0.56
LRFN1Q9P244 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN1Q9P244 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN1Q9P244 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 AF106564.1-201ENST00000607058 2553 ntBASIC18.53■□□□□ 0.56
LRFN1Q9P244 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.53■□□□□ 0.56
LRFN1Q9P244 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN1Q9P244 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 RPS2P4-201ENST00000476944 856 ntBASIC18.52■□□□□ 0.56
LRFN1Q9P244 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.56
LRFN1Q9P244 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN1Q9P244 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LRFN1Q9P244 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LRFN1Q9P244 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LRFN1Q9P244 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.52■□□□□ 0.55
LRFN1Q9P244 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LRFN1Q9P244 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
LRFN1Q9P244 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.51■□□□□ 0.55
LRFN1Q9P244 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRFN1Q9P244 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.51■□□□□ 0.55
LRFN1Q9P244 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 PLK5-205ENST00000642079 1969 ntBASIC18.5■□□□□ 0.55
LRFN1Q9P244 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRFN1Q9P244 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.5■□□□□ 0.55
LRFN1Q9P244 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms