Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS33AQ96AX1 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS33AQ96AX1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
VPS33AQ96AX1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
VPS33AQ96AX1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L2-201ENST00000561772 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L6-201ENST00000626483 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L1-201ENST00000627662 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L8-201ENST00000629013 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L3-201ENST00000630187 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L7-201ENST00000630678 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DUX4L5-201ENST00000630834 1275 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 DPP3P2-201ENST00000416030 1696 ntBASIC19.33■□□□□ 0.68
VPS33AQ96AX1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS33AQ96AX1 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 AL691432.2-201ENST00000607222 2038 ntBASIC19.32■□□□□ 0.68
VPS33AQ96AX1 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 AC142381.2-201ENST00000566120 298 ntBASIC19.32■□□□□ 0.68
VPS33AQ96AX1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 AP001160.3-201ENST00000601484 763 ntBASIC19.32■□□□□ 0.68
VPS33AQ96AX1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS33AQ96AX1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS33AQ96AX1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS33AQ96AX1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS33AQ96AX1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VPS33AQ96AX1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS33AQ96AX1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS33AQ96AX1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
VPS33AQ96AX1 KRT8P36-201ENST00000489121 1440 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms