Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
VPS8Q8N3P4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
VPS8Q8N3P4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 KRT8P20-201ENST00000423953 1409 ntBASIC31.66■■■□□ 2.66
VPS8Q8N3P4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 KRT17P3-201ENST00000420566 1262 ntBASIC31.66■■■□□ 2.66
VPS8Q8N3P4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC31.66■■■□□ 2.66
VPS8Q8N3P4 MTDHP1-201ENST00000605323 784 ntBASIC31.66■■■□□ 2.66
VPS8Q8N3P4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
VPS8Q8N3P4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC31.64■■■□□ 2.66
VPS8Q8N3P4 AL359736.2-201ENST00000621992 437 ntBASIC31.64■■■□□ 2.66
VPS8Q8N3P4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
VPS8Q8N3P4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 AC020907.5-201ENST00000624372 1936 ntBASIC31.62■■■□□ 2.65
VPS8Q8N3P4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
VPS8Q8N3P4 KRT8P17-201ENST00000453110 1448 ntBASIC31.61■■■□□ 2.65
VPS8Q8N3P4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC31.61■■■□□ 2.65
VPS8Q8N3P4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 RN7SL471P-201ENST00000580476 299 ntBASIC31.6■■■□□ 2.65
VPS8Q8N3P4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC31.6■■■□□ 2.65
VPS8Q8N3P4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC31.59■■■□□ 2.65
VPS8Q8N3P4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
VPS8Q8N3P4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
VPS8Q8N3P4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC31.58■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms