Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 PNMA6B-201ENST00000538162 1200 ntBASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SH3RF1Q7Z6J0 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 LINC01023-201ENST00000606054 436 ntBASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SH3RF1Q7Z6J0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SH3RF1Q7Z6J0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SH3RF1Q7Z6J0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
SH3RF1Q7Z6J0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
SH3RF1Q7Z6J0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 KRT17P3-201ENST00000420566 1262 ntBASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SH3RF1Q7Z6J0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.13■■□□□ 1.29
SH3RF1Q7Z6J0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 AC020907.5-201ENST00000624372 1936 ntBASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SH3RF1Q7Z6J0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 FP700111.2-201ENST00000619190 1892 ntBASIC23.11■■□□□ 1.29
SH3RF1Q7Z6J0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 AC092368.3-202ENST00000574180 1591 ntBASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms