Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 AL590326.2-201ENST00000625139 305 ntBASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
VPS13DQ5THJ4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AL137013.1-201ENST00000432946 1228 ntBASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AL121829.2-201ENST00000620908 328 ntBASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AL121894.2-201ENST00000602977 491 ntBASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AC104076.2-201ENST00000448912 469 ntBASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AL031963.3-201ENST00000606441 850 ntBASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 AC008040.2-201ENST00000461049 708 ntBASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
VPS13DQ5THJ4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 NIFKP9-201ENST00000419265 221 ntBASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 PGM5P4-201ENST00000421970 445 ntBASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 AL355355.2-201ENST00000442321 338 ntBASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 LINC01568-207ENST00000641790 1380 ntBASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 GUSBP5-202ENST00000510805 1989 ntBASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13DQ5THJ4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 AL049597.2-201ENST00000565575 961 ntBASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 AC242852.2-201ENST00000615738 1807 ntBASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13DQ5THJ4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC13.65□□□□□ -0.23
VPS13DQ5THJ4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 KRT16P1-201ENST00000399124 1418 ntBASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms