Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.52■□□□□ 0.88
USP39Q53GS9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.52■□□□□ 0.88
USP39Q53GS9 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.52■□□□□ 0.88
USP39Q53GS9 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.52■□□□□ 0.88
USP39Q53GS9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 AC110285.5-201ENST00000611501 352 ntBASIC20.52■□□□□ 0.88
USP39Q53GS9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.52■□□□□ 0.87
USP39Q53GS9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP39Q53GS9 AC087633.2-202ENST00000565166 1439 ntBASIC20.52■□□□□ 0.87
USP39Q53GS9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.52■□□□□ 0.87
USP39Q53GS9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP39Q53GS9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP39Q53GS9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP39Q53GS9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP39Q53GS9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.51■□□□□ 0.87
USP39Q53GS9 AL390719.1-204ENST00000412397 1219 ntBASIC20.51■□□□□ 0.87
USP39Q53GS9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.51■□□□□ 0.87
USP39Q53GS9 AC005829.2-201ENST00000571422 1056 ntBASIC20.51■□□□□ 0.87
USP39Q53GS9 MIR4785-201ENST00000585005 73 ntBASIC20.51■□□□□ 0.87
USP39Q53GS9 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
USP39Q53GS9 AC010331.1-201ENST00000611423 582 ntBASIC20.51■□□□□ 0.87
USP39Q53GS9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP39Q53GS9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP39Q53GS9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.51■□□□□ 0.87
USP39Q53GS9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP39Q53GS9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.51■□□□□ 0.87
USP39Q53GS9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.5■□□□□ 0.87
USP39Q53GS9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.5■□□□□ 0.87
USP39Q53GS9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.5■□□□□ 0.87
USP39Q53GS9 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.5■□□□□ 0.87
USP39Q53GS9 KRT18P21-201ENST00000515767 1272 ntBASIC20.5■□□□□ 0.87
USP39Q53GS9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.5■□□□□ 0.87
USP39Q53GS9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.5■□□□□ 0.87
USP39Q53GS9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.5■□□□□ 0.87
USP39Q53GS9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.5■□□□□ 0.87
USP39Q53GS9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.5■□□□□ 0.87
USP39Q53GS9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.5■□□□□ 0.87
USP39Q53GS9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP39Q53GS9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP39Q53GS9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP39Q53GS9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP39Q53GS9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
USP39Q53GS9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP39Q53GS9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP39Q53GS9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP39Q53GS9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
USP39Q53GS9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.49■□□□□ 0.87
USP39Q53GS9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.49■□□□□ 0.87
USP39Q53GS9 AC006557.6-201ENST00000623071 864 ntBASIC20.49■□□□□ 0.87
USP39Q53GS9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.49■□□□□ 0.87
USP39Q53GS9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.48■□□□□ 0.87
USP39Q53GS9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
USP39Q53GS9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.48■□□□□ 0.87
USP39Q53GS9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 KRASP1-201ENST00000407852 552 ntBASIC20.48■□□□□ 0.87
USP39Q53GS9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.48■□□□□ 0.87
USP39Q53GS9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.48■□□□□ 0.87
USP39Q53GS9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP39Q53GS9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.48■□□□□ 0.87
USP39Q53GS9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.48■□□□□ 0.87
USP39Q53GS9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP39Q53GS9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP39Q53GS9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
USP39Q53GS9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.47■□□□□ 0.87
USP39Q53GS9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP39Q53GS9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
USP39Q53GS9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
USP39Q53GS9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.47■□□□□ 0.87
USP39Q53GS9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
USP39Q53GS9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.47■□□□□ 0.87
USP39Q53GS9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP39Q53GS9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP39Q53GS9 FEM1AP4-201ENST00000443167 1987 ntBASIC20.46■□□□□ 0.87
USP39Q53GS9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.46■□□□□ 0.87
USP39Q53GS9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP39Q53GS9 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms