Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 GRR1YJR090C 3456 nt2.05□□□□□ -2.08
RPN11P43588 PET309YLR067C 2898 nt2.04□□□□□ -2.08
RPN11P43588 YER097WYER097W 330 nt2.04□□□□□ -2.08
RPN11P43588 YKL165C-AYKL165C-A 234 nt2.04□□□□□ -2.08
RPN11P43588 YKR075W-AYKR075W-A 270 nt2.04□□□□□ -2.08
RPN11P43588 YMR141W-AYMR141W-A 225 nt2.04□□□□□ -2.08
RPN11P43588 DFG16YOR030W 1860 nt2.04□□□□□ -2.08
RPN11P43588 SGO1YOR073W 1773 nt2.04□□□□□ -2.08
RPN11P43588 CAT8YMR280C 4302 nt2.04□□□□□ -2.08
RPN11P43588 YDR341CYDR341C 1824 nt2.03□□□□□ -2.08
RPN11P43588 RPL35AYDL191W 363 nt2.03□□□□□ -2.08
RPN11P43588 YOR199WYOR199W 330 nt2.03□□□□□ -2.08
RPN11P43588 NOP53YPL146C 1368 nt2.02□□□□□ -2.09
RPN11P43588 YLR053CYLR053C 327 nt2.02□□□□□ -2.09
RPN11P43588 YCL046WYCL046W 324 nt2.02□□□□□ -2.09
RPN11P43588 YMR031W-AYMR031W-A 327 nt2.01□□□□□ -2.09
RPN11P43588 RKM1YPL208W 1752 nt2□□□□□ -2.09
RPN11P43588 SWI5YDR146C 2130 nt2□□□□□ -2.09
RPN11P43588 HDA3YPR179C 1968 nt2□□□□□ -2.09
RPN11P43588 YCR043CYCR043C 384 nt2□□□□□ -2.09
RPN11P43588 RPL37BYDR500C 267 nt2□□□□□ -2.09
RPN11P43588 YHR180W-AYHR180W-A 183 nt2□□□□□ -2.09
RPN11P43588 UPS1YLR193C 528 nt2□□□□□ -2.09
RPN11P43588 YML099W-AYML099W-A 330 nt2□□□□□ -2.09
RPN11P43588 YNL114CYNL114C 372 nt2□□□□□ -2.09
RPN11P43588 MSH6YDR097C 3729 nt2□□□□□ -2.09
RPN11P43588 IST2YBR086C 2841 nt1.99□□□□□ -2.09
RPN11P43588 OSH6YKR003W 1347 nt1.99□□□□□ -2.09
RPN11P43588 MSH3YCR092C 3057 nt1.99□□□□□ -2.09
RPN11P43588 YDR008CYDR008C 351 nt1.99□□□□□ -2.09
RPN11P43588 CYC7YEL039C 342 nt1.99□□□□□ -2.09
RPN11P43588 MET18YIL128W 3099 nt1.99□□□□□ -2.09
RPN11P43588 PDR8YLR266C 2106 nt1.99□□□□□ -2.09
RPN11P43588 YIL059CYIL059C 366 nt1.98□□□□□ -2.09
RPN11P43588 YKL183C-AYKL183C-A 213 nt1.98□□□□□ -2.09
RPN11P43588 NAM7YMR080C 2916 nt1.98□□□□□ -2.09
RPN11P43588 PXA2YKL188C 2562 nt1.98□□□□□ -2.09
RPN11P43588 SYH1YPL105C 2550 nt1.98□□□□□ -2.09
RPN11P43588 EFR3YMR212C 2349 nt1.97□□□□□ -2.09
RPN11P43588 YDR048CYDR048C 315 nt1.96□□□□□ -2.1
RPN11P43588 PFD1YJL179W 330 nt1.96□□□□□ -2.1
RPN11P43588 MCD1YDL003W 1701 nt1.96□□□□□ -2.1
RPN11P43588 MGA2YIR033W 3342 nt1.95□□□□□ -2.1
RPN11P43588 YHR007C-AYHR007C-A 216 nt1.95□□□□□ -2.1
RPN11P43588 MAM33YIL070C 801 nt1.95□□□□□ -2.1
RPN11P43588 YJL135WYJL135W 318 nt1.95□□□□□ -2.1
RPN11P43588 CYB5YNL111C 363 nt1.95□□□□□ -2.1
RPN11P43588 HHT1YBR010W 411 nt1.95□□□□□ -2.1
RPN11P43588 RTT101YJL047C 2529 nt1.95□□□□□ -2.1
RPN11P43588 BUD2YKL092C 3315 nt1.95□□□□□ -2.1
RPN11P43588 NUP120YKL057C 3114 nt1.95□□□□□ -2.1
RPN11P43588 VPS15YBR097W 4365 nt1.94□□□□□ -2.1
RPN11P43588 YER181CYER181C 324 nt1.94□□□□□ -2.1
RPN11P43588 YLR146W-AYLR146W-A 189 nt1.94□□□□□ -2.1
RPN11P43588 YCR102W-AYCR102W-A 198 nt1.93□□□□□ -2.1
RPN11P43588 SRP14YDL092W 441 nt1.93□□□□□ -2.1
RPN11P43588 YDL118WYDL118W 381 nt1.93□□□□□ -2.1
RPN11P43588 HTB2YBL002W 396 nt1.93□□□□□ -2.1
RPN11P43588 YOR231C-AYOR231C-A 201 nt1.93□□□□□ -2.1
RPN11P43588 YPR010C-AYPR010C-A 219 nt1.93□□□□□ -2.1
RPN11P43588 RPH1YER169W 2391 nt1.93□□□□□ -2.1
RPN11P43588 YLR422WYLR422W 5799 nt1.93□□□□□ -2.1
RPN11P43588 YJR039WYJR039W 3366 nt1.92□□□□□ -2.1
RPN11P43588 YOP1YPR028W 543 nt1.92□□□□□ -2.1
RPN11P43588 NUT2YPR168W 474 nt1.92□□□□□ -2.1
RPN11P43588 SWI6YLR182W 2412 nt1.92□□□□□ -2.1
RPN11P43588 GCN2YDR283C 4980 nt1.91□□□□□ -2.1
RPN11P43588 ATG9YDL149W 2994 nt1.91□□□□□ -2.1
RPN11P43588 STE5YDR103W 2754 nt1.91□□□□□ -2.1
RPN11P43588 QCR9YGR183C 201 nt1.91□□□□□ -2.1
RPN11P43588 TRX1YLR043C 312 nt1.91□□□□□ -2.1
RPN11P43588 YMR193C-AYMR193C-A 387 nt1.91□□□□□ -2.1
RPN11P43588 RPS30BYOR182C 192 nt1.91□□□□□ -2.1
RPN11P43588 snR51snR51 107 nt1.91□□□□□ -2.1
RPN11P43588 ZRG8YER033C 3231 nt1.91□□□□□ -2.1
RPN11P43588 TDA9YML081W 3756 nt1.91□□□□□ -2.1
RPN11P43588 HIR3YJR140C 4947 nt1.91□□□□□ -2.1
RPN11P43588 COG4YPR105C 2586 nt1.91□□□□□ -2.1
RPN11P43588 MVP1YMR004W 1536 nt1.91□□□□□ -2.1
RPN11P43588 YLR419WYLR419W 4308 nt1.9□□□□□ -2.1
RPN11P43588 YCR087C-AYCR087C-A 462 nt1.9□□□□□ -2.11
RPN11P43588 YDR169C-AYDR169C-A 150 nt1.9□□□□□ -2.11
RPN11P43588 YDR426CYDR426C 378 nt1.9□□□□□ -2.11
RPN11P43588 TAR1YLR154W-C 375 nt1.9□□□□□ -2.11
RPN11P43588 RPB10YOR210W 213 nt1.9□□□□□ -2.11
RPN11P43588 YDR003W-AYDR003W-A 123 nt1.89□□□□□ -2.11
RPN11P43588 YIL102CYIL102C 306 nt1.89□□□□□ -2.11
RPN11P43588 UBP2YOR124C 3819 nt1.89□□□□□ -2.11
RPN11P43588 MSH5YDL154W 2706 nt1.89□□□□□ -2.11
RPN11P43588 LAA1YJL207C 6045 nt1.88□□□□□ -2.11
RPN11P43588 snR72snR72 98 nt1.88□□□□□ -2.11
RPN11P43588 YAR029WYAR029W 225 nt1.88□□□□□ -2.11
RPN11P43588 LYS14YDR034C 2373 nt1.88□□□□□ -2.11
RPN11P43588 OST1YJL002C 1431 nt1.88□□□□□ -2.11
RPN11P43588 DBP6YNR038W 1890 nt1.88□□□□□ -2.11
RPN11P43588 CFT2YLR115W 2580 nt1.88□□□□□ -2.11
RPN11P43588 CAT2YML042W 2013 nt1.88□□□□□ -2.11
RPN11P43588 YCR022CYCR022C 345 nt1.87□□□□□ -2.11
RPN11P43588 YDR183C-AYDR183C-A 258 nt1.87□□□□□ -2.11
RPN11P43588 YFL063WYFL063W 456 nt1.87□□□□□ -2.11
Retrieved 100 of 7,029 protein–RNA pairs in 6.5 ms