Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
RFC4P35249 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
RFC4P35249 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RFC4P35249 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
RFC4P35249 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RFC4P35249 CFL2-205ENST00000555765 632 ntTSL 2 BASIC25.51■■□□□ 1.67
RFC4P35249 KRT8P36-201ENST00000489121 1440 ntBASIC25.51■■□□□ 1.67
RFC4P35249 AC073508.3-201ENST00000619697 1419 ntBASIC25.51■■□□□ 1.67
RFC4P35249 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RFC4P35249 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RFC4P35249 AC242852.2-201ENST00000615738 1807 ntBASIC25.51■■□□□ 1.67
RFC4P35249 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
RFC4P35249 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
RFC4P35249 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC25.5■■□□□ 1.67
RFC4P35249 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
RFC4P35249 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC25.49■■□□□ 1.67
RFC4P35249 SLC25A3P1-201ENST00000443844 931 ntBASIC25.49■■□□□ 1.67
RFC4P35249 KSR1P1-201ENST00000446298 240 ntBASIC25.49■■□□□ 1.67
RFC4P35249 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.49■■□□□ 1.67
RFC4P35249 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC25.49■■□□□ 1.67
RFC4P35249 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
RFC4P35249 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
RFC4P35249 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
RFC4P35249 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC25.49■■□□□ 1.67
RFC4P35249 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RFC4P35249 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
RFC4P35249 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
RFC4P35249 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
RFC4P35249 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RFC4P35249 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC25.48■■□□□ 1.67
RFC4P35249 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.48■■□□□ 1.67
RFC4P35249 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.48■■□□□ 1.67
RFC4P35249 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.48■■□□□ 1.67
RFC4P35249 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.48■■□□□ 1.67
RFC4P35249 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RFC4P35249 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
RFC4P35249 DYM-203ENST00000442713 2147 ntTSL 2 BASIC25.48■■□□□ 1.67
RFC4P35249 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RFC4P35249 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
RFC4P35249 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
RFC4P35249 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RFC4P35249 STAC-204ENST00000457375 1366 ntTSL 2 BASIC25.47■■□□□ 1.67
RFC4P35249 AC027702.1-201ENST00000563810 1770 ntBASIC25.47■■□□□ 1.67
RFC4P35249 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RFC4P35249 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
RFC4P35249 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.47■■□□□ 1.67
RFC4P35249 NIFKP9-201ENST00000419265 221 ntBASIC25.47■■□□□ 1.67
RFC4P35249 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC25.47■■□□□ 1.67
RFC4P35249 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC25.47■■□□□ 1.67
RFC4P35249 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC25.47■■□□□ 1.67
RFC4P35249 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RFC4P35249 NTF6B-201ENST00000591913 560 ntBASIC25.47■■□□□ 1.67
RFC4P35249 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC25.47■■□□□ 1.67
RFC4P35249 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
RFC4P35249 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
RFC4P35249 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC25.46■■□□□ 1.67
RFC4P35249 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC25.46■■□□□ 1.67
RFC4P35249 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC25.46■■□□□ 1.67
RFC4P35249 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.46■■□□□ 1.67
RFC4P35249 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC25.46■■□□□ 1.67
RFC4P35249 DUX4L26-201ENST00000489078 1255 ntBASIC25.46■■□□□ 1.67
RFC4P35249 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.46■■□□□ 1.67
RFC4P35249 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.46■■□□□ 1.67
RFC4P35249 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
RFC4P35249 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC25.46■■□□□ 1.67
RFC4P35249 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RFC4P35249 KRT16P1-201ENST00000399124 1418 ntBASIC25.46■■□□□ 1.67
RFC4P35249 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
RFC4P35249 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
RFC4P35249 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
RFC4P35249 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC25.45■■□□□ 1.66
RFC4P35249 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.45■■□□□ 1.66
RFC4P35249 AC104076.2-201ENST00000448912 469 ntBASIC25.45■■□□□ 1.66
RFC4P35249 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
RFC4P35249 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.45■■□□□ 1.66
RFC4P35249 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC25.45■■□□□ 1.66
RFC4P35249 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.66
RFC4P35249 MIR2861-201ENST00000636310 90 ntBASIC25.45■■□□□ 1.66
RFC4P35249 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC25.45■■□□□ 1.66
RFC4P35249 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
RFC4P35249 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC25.45■■□□□ 1.66
RFC4P35249 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC25.44■■□□□ 1.66
RFC4P35249 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
RFC4P35249 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
RFC4P35249 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
RFC4P35249 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms