Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.74■□□□□ 0.75
SHMT2P34897 AL391422.3-201ENST00000603791 2761 ntBASIC19.74■□□□□ 0.75
SHMT2P34897 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.74■□□□□ 0.75
SHMT2P34897 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.73■□□□□ 0.75
SHMT2P34897 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SHMT2P34897 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.73■□□□□ 0.75
SHMT2P34897 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SHMT2P34897 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SHMT2P34897 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.73■□□□□ 0.75
SHMT2P34897 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SHMT2P34897 MYC-209ENST00000641252 345 ntBASIC19.73■□□□□ 0.75
SHMT2P34897 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
SHMT2P34897 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.73■□□□□ 0.75
SHMT2P34897 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SHMT2P34897 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHMT2P34897 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SHMT2P34897 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SHMT2P34897 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SHMT2P34897 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
SHMT2P34897 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SHMT2P34897 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.72■□□□□ 0.75
SHMT2P34897 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.72■□□□□ 0.75
SHMT2P34897 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SHMT2P34897 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SHMT2P34897 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHMT2P34897 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
SHMT2P34897 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.71■□□□□ 0.75
SHMT2P34897 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.71■□□□□ 0.75
SHMT2P34897 KRT8P36-201ENST00000489121 1440 ntBASIC19.71■□□□□ 0.75
SHMT2P34897 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.71■□□□□ 0.75
SHMT2P34897 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.71■□□□□ 0.75
SHMT2P34897 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SHMT2P34897 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.71■□□□□ 0.75
SHMT2P34897 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.71■□□□□ 0.75
SHMT2P34897 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.71■□□□□ 0.75
SHMT2P34897 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SHMT2P34897 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.71■□□□□ 0.75
SHMT2P34897 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.71■□□□□ 0.75
SHMT2P34897 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHMT2P34897 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
SHMT2P34897 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.71■□□□□ 0.75
SHMT2P34897 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.7■□□□□ 0.74
SHMT2P34897 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.7■□□□□ 0.74
SHMT2P34897 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.7■□□□□ 0.74
SHMT2P34897 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.7■□□□□ 0.74
SHMT2P34897 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHMT2P34897 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.7■□□□□ 0.74
SHMT2P34897 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
SHMT2P34897 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.7■□□□□ 0.74
SHMT2P34897 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHMT2P34897 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SHMT2P34897 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SHMT2P34897 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.69■□□□□ 0.74
SHMT2P34897 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms