Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.02■□□□□ 0.96
VCANP13611 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.02■□□□□ 0.96
VCANP13611 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.02■□□□□ 0.95
VCANP13611 AP005242.2-201ENST00000580065 1175 ntBASIC21.02■□□□□ 0.95
VCANP13611 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.02■□□□□ 0.95
VCANP13611 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VCANP13611 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.01■□□□□ 0.95
VCANP13611 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
VCANP13611 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
VCANP13611 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.01■□□□□ 0.95
VCANP13611 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.01■□□□□ 0.95
VCANP13611 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.01■□□□□ 0.95
VCANP13611 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCANP13611 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.01■□□□□ 0.95
VCANP13611 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21■□□□□ 0.95
VCANP13611 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21■□□□□ 0.95
VCANP13611 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VCANP13611 PGM5P4-201ENST00000421970 445 ntBASIC21■□□□□ 0.95
VCANP13611 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VCANP13611 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 RER1-204ENST00000378518 522 ntTSL 3 BASIC21■□□□□ 0.95
VCANP13611 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCANP13611 F2R-202ENST00000505600 442 ntTSL 2 BASIC21■□□□□ 0.95
VCANP13611 GRAMD4P8-201ENST00000605465 1115 ntBASIC21■□□□□ 0.95
VCANP13611 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21■□□□□ 0.95
VCANP13611 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21■□□□□ 0.95
VCANP13611 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 NIFKP9-201ENST00000419265 221 ntBASIC20.99■□□□□ 0.95
VCANP13611 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.99■□□□□ 0.95
VCANP13611 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
VCANP13611 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
VCANP13611 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 AC007322.3-201ENST00000426526 701 ntBASIC20.99■□□□□ 0.95
VCANP13611 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.99■□□□□ 0.95
VCANP13611 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.99■□□□□ 0.95
VCANP13611 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.99■□□□□ 0.95
VCANP13611 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.99■□□□□ 0.95
VCANP13611 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.99■□□□□ 0.95
VCANP13611 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCANP13611 AC116050.2-201ENST00000612102 1779 ntBASIC20.98■□□□□ 0.95
VCANP13611 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VCANP13611 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCANP13611 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCANP13611 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.98■□□□□ 0.95
VCANP13611 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.98■□□□□ 0.95
VCANP13611 EGLN1P1-201ENST00000531623 762 ntBASIC20.98■□□□□ 0.95
VCANP13611 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.98■□□□□ 0.95
VCANP13611 AC111152.3-201ENST00000569699 673 ntBASIC20.98■□□□□ 0.95
VCANP13611 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.98■□□□□ 0.95
VCANP13611 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VCANP13611 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.98■□□□□ 0.95
VCANP13611 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.98■□□□□ 0.95
VCANP13611 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.98■□□□□ 0.95
VCANP13611 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.98■□□□□ 0.95
VCANP13611 UNC93B7-201ENST00000509439 705 ntBASIC20.98■□□□□ 0.95
VCANP13611 AC026271.3-201ENST00000571884 352 ntBASIC20.98■□□□□ 0.95
VCANP13611 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.98■□□□□ 0.95
VCANP13611 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VCANP13611 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCANP13611 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.98■□□□□ 0.95
VCANP13611 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCANP13611 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 AC104692.2-201ENST00000603054 253 ntBASIC20.97■□□□□ 0.95
VCANP13611 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.97■□□□□ 0.95
VCANP13611 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
VCANP13611 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.97■□□□□ 0.95
VCANP13611 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.97■□□□□ 0.95
VCANP13611 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.97■□□□□ 0.95
VCANP13611 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.97■□□□□ 0.95
VCANP13611 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCANP13611 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.97■□□□□ 0.95
VCANP13611 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms