Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
PGK1P00558 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PGK1P00558 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PGK1P00558 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.57■■□□□ 1.2
PGK1P00558 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PGK1P00558 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
PGK1P00558 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.56■■□□□ 1.2
PGK1P00558 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
PGK1P00558 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
PGK1P00558 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.56■■□□□ 1.2
PGK1P00558 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.56■■□□□ 1.2
PGK1P00558 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.56■■□□□ 1.2
PGK1P00558 NUDT16P1-203ENST00000513809 620 ntBASIC22.56■■□□□ 1.2
PGK1P00558 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
PGK1P00558 REXO1L10P-201ENST00000615707 1290 ntBASIC22.56■■□□□ 1.2
PGK1P00558 AC005363.2-201ENST00000618631 242 ntBASIC22.56■■□□□ 1.2
PGK1P00558 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
PGK1P00558 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PGK1P00558 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
PGK1P00558 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.55■■□□□ 1.2
PGK1P00558 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC22.55■■□□□ 1.2
PGK1P00558 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.55■■□□□ 1.2
PGK1P00558 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.55■■□□□ 1.2
PGK1P00558 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.55■■□□□ 1.2
PGK1P00558 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.55■■□□□ 1.2
PGK1P00558 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.55■■□□□ 1.2
PGK1P00558 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
PGK1P00558 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
PGK1P00558 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.54■■□□□ 1.2
PGK1P00558 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
PGK1P00558 AC005521.1-201ENST00000393351 872 ntBASIC22.54■■□□□ 1.2
PGK1P00558 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.54■■□□□ 1.2
PGK1P00558 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC22.54■■□□□ 1.2
PGK1P00558 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 AL121906.2-201ENST00000621597 723 ntBASIC22.54■■□□□ 1.2
PGK1P00558 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
PGK1P00558 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PGK1P00558 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
PGK1P00558 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 AC027702.1-201ENST00000563810 1770 ntBASIC22.53■■□□□ 1.2
PGK1P00558 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.53■■□□□ 1.2
PGK1P00558 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
PGK1P00558 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.53■■□□□ 1.2
PGK1P00558 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 MIR1238-201ENST00000408483 83 ntBASIC22.53■■□□□ 1.2
PGK1P00558 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
PGK1P00558 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.53■■□□□ 1.2
PGK1P00558 AP002982.1-201ENST00000492365 877 ntBASIC22.53■■□□□ 1.2
PGK1P00558 P4HB-223ENST00000576390 439 ntTSL 4 BASIC22.53■■□□□ 1.2
PGK1P00558 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.53■■□□□ 1.2
PGK1P00558 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
PGK1P00558 KRT8P36-201ENST00000489121 1440 ntBASIC22.53■■□□□ 1.2
PGK1P00558 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.53■■□□□ 1.2
PGK1P00558 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PGK1P00558 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.52■■□□□ 1.2
PGK1P00558 AC233723.2-201ENST00000623798 2106 ntBASIC22.52■■□□□ 1.2
PGK1P00558 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 UNC93B2-201ENST00000285383 730 ntBASIC22.52■■□□□ 1.2
PGK1P00558 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.52■■□□□ 1.2
PGK1P00558 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.52■■□□□ 1.2
PGK1P00558 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PGK1P00558 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.52■■□□□ 1.2
PGK1P00558 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.52■■□□□ 1.2
PGK1P00558 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.52■■□□□ 1.2
PGK1P00558 AL590326.2-201ENST00000625139 305 ntBASIC22.52■■□□□ 1.2
PGK1P00558 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.52■■□□□ 1.2
PGK1P00558 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PGK1P00558 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
PGK1P00558 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PGK1P00558 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.51■■□□□ 1.19
PGK1P00558 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms