Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
PRPF40AO75400 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
PRPF40AO75400 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
PRPF40AO75400 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.4■■□□□ 1.34
PRPF40AO75400 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PRPF40AO75400 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
PRPF40AO75400 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
PRPF40AO75400 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.4■■□□□ 1.34
PRPF40AO75400 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC23.4■■□□□ 1.34
PRPF40AO75400 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.4■■□□□ 1.34
PRPF40AO75400 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
PRPF40AO75400 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.34
PRPF40AO75400 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
PRPF40AO75400 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC23.39■■□□□ 1.34
PRPF40AO75400 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
PRPF40AO75400 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PRPF40AO75400 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.39■■□□□ 1.33
PRPF40AO75400 AC012414.1-201ENST00000556676 535 ntBASIC23.39■■□□□ 1.33
PRPF40AO75400 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.39■■□□□ 1.33
PRPF40AO75400 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.39■■□□□ 1.33
PRPF40AO75400 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC23.39■■□□□ 1.33
PRPF40AO75400 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
PRPF40AO75400 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PRPF40AO75400 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PRPF40AO75400 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
PRPF40AO75400 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.38■■□□□ 1.33
PRPF40AO75400 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC23.38■■□□□ 1.33
PRPF40AO75400 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.38■■□□□ 1.33
PRPF40AO75400 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.38■■□□□ 1.33
PRPF40AO75400 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
PRPF40AO75400 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.38■■□□□ 1.33
PRPF40AO75400 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.38■■□□□ 1.33
PRPF40AO75400 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PRPF40AO75400 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC23.38■■□□□ 1.33
PRPF40AO75400 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC23.38■■□□□ 1.33
PRPF40AO75400 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC23.37■■□□□ 1.33
PRPF40AO75400 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 AC008175.2-201ENST00000612840 297 ntBASIC23.37■■□□□ 1.33
PRPF40AO75400 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.37■■□□□ 1.33
PRPF40AO75400 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
PRPF40AO75400 AC093484.2-201ENST00000580996 2166 ntBASIC23.37■■□□□ 1.33
PRPF40AO75400 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.36■■□□□ 1.33
PRPF40AO75400 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.36■■□□□ 1.33
PRPF40AO75400 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 POU5F1P4-201ENST00000413175 1085 ntBASIC23.36■■□□□ 1.33
PRPF40AO75400 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.36■■□□□ 1.33
PRPF40AO75400 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PRPF40AO75400 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
PRPF40AO75400 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.35■■□□□ 1.33
PRPF40AO75400 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PRPF40AO75400 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
PRPF40AO75400 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.35■■□□□ 1.33
PRPF40AO75400 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PRPF40AO75400 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.35■■□□□ 1.33
PRPF40AO75400 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.35■■□□□ 1.33
PRPF40AO75400 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.35■■□□□ 1.33
PRPF40AO75400 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.35■■□□□ 1.33
PRPF40AO75400 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.35■■□□□ 1.33
PRPF40AO75400 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.35■■□□□ 1.33
PRPF40AO75400 MIR6821-201ENST00000617625 74 ntBASIC23.35■■□□□ 1.33
PRPF40AO75400 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
PRPF40AO75400 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PRPF40AO75400 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
PRPF40AO75400 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PRPF40AO75400 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.35■■□□□ 1.33
PRPF40AO75400 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.35■■□□□ 1.33
PRPF40AO75400 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.35■■□□□ 1.33
PRPF40AO75400 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC23.34■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms