Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC28.69■■■□□ 2.18
NPHP4O75161 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP4O75161 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC28.69■■■□□ 2.18
NPHP4O75161 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC28.69■■■□□ 2.18
NPHP4O75161 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC28.69■■■□□ 2.18
NPHP4O75161 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.69■■■□□ 2.18
NPHP4O75161 AC080038.3-201ENST00000623346 1952 ntBASIC28.69■■■□□ 2.18
NPHP4O75161 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP4O75161 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC28.69■■■□□ 2.18
NPHP4O75161 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP4O75161 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP4O75161 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC28.69■■■□□ 2.18
NPHP4O75161 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC28.69■■■□□ 2.18
NPHP4O75161 AC128688.1-201ENST00000487626 519 ntBASIC28.69■■■□□ 2.18
NPHP4O75161 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC28.68■■■□□ 2.18
NPHP4O75161 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC28.68■■■□□ 2.18
NPHP4O75161 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC28.68■■■□□ 2.18
NPHP4O75161 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
NPHP4O75161 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
NPHP4O75161 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
NPHP4O75161 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC28.68■■■□□ 2.18
NPHP4O75161 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC28.68■■■□□ 2.18
NPHP4O75161 ABBA01031674.1-201ENST00000635145 728 ntBASIC28.68■■■□□ 2.18
NPHP4O75161 VPS72-207ENST00000640458 689 ntTSL 5 BASIC28.68■■■□□ 2.18
NPHP4O75161 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC28.68■■■□□ 2.18
NPHP4O75161 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP4O75161 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC28.67■■■□□ 2.18
NPHP4O75161 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
NPHP4O75161 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC28.67■■■□□ 2.18
NPHP4O75161 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP4O75161 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP4O75161 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP4O75161 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC28.67■■■□□ 2.18
NPHP4O75161 B3GAT3P1-201ENST00000471720 806 ntBASIC28.67■■■□□ 2.18
NPHP4O75161 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
NPHP4O75161 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP4O75161 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP4O75161 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP4O75161 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP4O75161 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP4O75161 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC28.66■■■□□ 2.18
NPHP4O75161 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC28.66■■■□□ 2.18
NPHP4O75161 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC28.66■■■□□ 2.18
NPHP4O75161 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC28.66■■■□□ 2.18
NPHP4O75161 AC139887.4-201ENST00000607877 719 ntBASIC28.66■■■□□ 2.18
NPHP4O75161 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC28.65■■■□□ 2.18
NPHP4O75161 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
NPHP4O75161 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC28.65■■■□□ 2.18
NPHP4O75161 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP4O75161 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC28.65■■■□□ 2.18
NPHP4O75161 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP4O75161 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP4O75161 RNF152P1-201ENST00000397754 604 ntBASIC28.65■■■□□ 2.18
NPHP4O75161 PPP1R14BP5-201ENST00000440334 435 ntBASIC28.65■■■□□ 2.18
NPHP4O75161 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC28.65■■■□□ 2.18
NPHP4O75161 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC28.65■■■□□ 2.18
NPHP4O75161 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP4O75161 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP4O75161 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC28.64■■■□□ 2.18
NPHP4O75161 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC28.64■■■□□ 2.18
NPHP4O75161 AL138966.2-201ENST00000621997 464 ntBASIC28.64■■■□□ 2.18
NPHP4O75161 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP4O75161 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC28.64■■■□□ 2.18
NPHP4O75161 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
NPHP4O75161 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC28.63■■■□□ 2.17
NPHP4O75161 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC28.63■■■□□ 2.17
NPHP4O75161 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
NPHP4O75161 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
NPHP4O75161 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC28.63■■■□□ 2.17
NPHP4O75161 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC28.63■■■□□ 2.17
NPHP4O75161 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC28.63■■■□□ 2.17
NPHP4O75161 C1QL1P1-201ENST00000568105 661 ntBASIC28.63■■■□□ 2.17
NPHP4O75161 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
NPHP4O75161 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
NPHP4O75161 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
NPHP4O75161 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
NPHP4O75161 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC28.62■■■□□ 2.17
NPHP4O75161 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP4O75161 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
NPHP4O75161 HMGA1P5-201ENST00000412453 271 ntBASIC28.62■■■□□ 2.17
NPHP4O75161 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP4O75161 FAM207BP-201ENST00000447172 505 ntBASIC28.62■■■□□ 2.17
NPHP4O75161 YBX1P2-201ENST00000489612 999 ntBASIC28.62■■■□□ 2.17
NPHP4O75161 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC28.62■■■□□ 2.17
NPHP4O75161 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC28.62■■■□□ 2.17
NPHP4O75161 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP4O75161 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP4O75161 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP4O75161 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NPHP4O75161 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC28.62■■■□□ 2.17
NPHP4O75161 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC28.61■■■□□ 2.17
NPHP4O75161 PCED1CP-201ENST00000419887 785 ntBASIC28.61■■■□□ 2.17
NPHP4O75161 FAM86EP-206ENST00000510506 987 ntBASIC28.61■■■□□ 2.17
NPHP4O75161 AL445675.2-201ENST00000620291 557 ntBASIC28.61■■■□□ 2.17
NPHP4O75161 AL121956.5-201ENST00000625261 221 ntBASIC28.61■■■□□ 2.17
NPHP4O75161 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC28.61■■■□□ 2.17
NPHP4O75161 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC28.61■■■□□ 2.17
NPHP4O75161 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
NPHP4O75161 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
NPHP4O75161 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms