Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.62■□□□□ 0.89
HOXC11O43248 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.62■□□□□ 0.89
HOXC11O43248 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC11O43248 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HOXC11O43248 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC11O43248 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC11O43248 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HOXC11O43248 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.62■□□□□ 0.89
HOXC11O43248 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC11O43248 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.62■□□□□ 0.89
HOXC11O43248 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC11O43248 AL135905.2-201ENST00000584934 1404 ntBASIC20.61■□□□□ 0.89
HOXC11O43248 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC11O43248 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HOXC11O43248 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HOXC11O43248 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HOXC11O43248 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HOXC11O43248 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.61■□□□□ 0.89
HOXC11O43248 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC11O43248 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC11O43248 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC11O43248 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC11O43248 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC11O43248 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
HOXC11O43248 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HOXC11O43248 PTBP1P-201ENST00000554374 1601 ntBASIC20.6■□□□□ 0.89
HOXC11O43248 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC11O43248 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.6■□□□□ 0.89
HOXC11O43248 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.6■□□□□ 0.89
HOXC11O43248 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HOXC11O43248 RARRES2P10-201ENST00000564312 460 ntBASIC20.6■□□□□ 0.89
HOXC11O43248 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.6■□□□□ 0.89
HOXC11O43248 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.6■□□□□ 0.89
HOXC11O43248 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC11O43248 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 PLK5-205ENST00000642079 1969 ntBASIC20.59■□□□□ 0.89
HOXC11O43248 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC11O43248 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC11O43248 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC11O43248 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.59■□□□□ 0.89
HOXC11O43248 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC11O43248 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.59■□□□□ 0.89
HOXC11O43248 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HOXC11O43248 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.59■□□□□ 0.89
HOXC11O43248 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.59■□□□□ 0.89
HOXC11O43248 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.59■□□□□ 0.89
HOXC11O43248 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC11O43248 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
HOXC11O43248 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC11O43248 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC11O43248 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC11O43248 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.58■□□□□ 0.89
HOXC11O43248 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.58■□□□□ 0.89
HOXC11O43248 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC11O43248 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC11O43248 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.58■□□□□ 0.89
HOXC11O43248 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC11O43248 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC11O43248 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC11O43248 AP001412.1-201ENST00000608405 714 ntBASIC20.58■□□□□ 0.89
HOXC11O43248 AL121906.2-201ENST00000621597 723 ntBASIC20.58■□□□□ 0.89
HOXC11O43248 AL049637.2-201ENST00000641778 930 ntBASIC20.58■□□□□ 0.89
HOXC11O43248 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
HOXC11O43248 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms