Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC28A1O00337 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.41■□□□□ 0.7
SLC28A1O00337 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SLC28A1O00337 AC034268.1-201ENST00000441047 882 ntBASIC19.41■□□□□ 0.7
SLC28A1O00337 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.41■□□□□ 0.7
SLC28A1O00337 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC28A1O00337 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC28A1O00337 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC28A1O00337 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.41■□□□□ 0.7
SLC28A1O00337 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SLC28A1O00337 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.41■□□□□ 0.7
SLC28A1O00337 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC28A1O00337 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.41■□□□□ 0.7
SLC28A1O00337 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.41■□□□□ 0.7
SLC28A1O00337 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SLC28A1O00337 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 BX119927.1-201ENST00000636596 1552 ntBASIC19.4■□□□□ 0.7
SLC28A1O00337 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SLC28A1O00337 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.4■□□□□ 0.7
SLC28A1O00337 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC28A1O00337 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC28A1O00337 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.39■□□□□ 0.7
SLC28A1O00337 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.39■□□□□ 0.7
SLC28A1O00337 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.39■□□□□ 0.7
SLC28A1O00337 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SLC28A1O00337 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.39■□□□□ 0.69
SLC28A1O00337 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC28A1O00337 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SLC28A1O00337 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.39■□□□□ 0.69
SLC28A1O00337 AL162412.1-201ENST00000567129 965 ntBASIC19.39■□□□□ 0.69
SLC28A1O00337 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.39■□□□□ 0.69
SLC28A1O00337 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.39■□□□□ 0.69
SLC28A1O00337 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC28A1O00337 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC28A1O00337 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.39■□□□□ 0.69
SLC28A1O00337 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SLC28A1O00337 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SLC28A1O00337 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC28A1O00337 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.38■□□□□ 0.69
SLC28A1O00337 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 CYP21A1P-202ENST00000354927 1481 ntBASIC19.38■□□□□ 0.69
SLC28A1O00337 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.38■□□□□ 0.69
SLC28A1O00337 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SLC28A1O00337 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.38■□□□□ 0.69
SLC28A1O00337 KRT18P11-201ENST00000435214 1283 ntBASIC19.38■□□□□ 0.69
SLC28A1O00337 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.38■□□□□ 0.69
SLC28A1O00337 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.38■□□□□ 0.69
SLC28A1O00337 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.38■□□□□ 0.69
SLC28A1O00337 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SLC28A1O00337 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.38■□□□□ 0.69
SLC28A1O00337 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.38■□□□□ 0.69
SLC28A1O00337 TMEM179-206ENST00000616017 1645 ntBASIC19.38■□□□□ 0.69
SLC28A1O00337 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.38■□□□□ 0.69
SLC28A1O00337 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.38■□□□□ 0.69
SLC28A1O00337 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SLC28A1O00337 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC28A1O00337 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC28A1O00337 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SLC28A1O00337 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms