Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 HMGA1P5-201ENST00000412453 271 ntBASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 AC069148.1-201ENST00000608741 768 ntBASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 AL691432.3-201ENST00000621860 400 ntBASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A6A6NMZ7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 AL031985.4-201ENST00000642138 673 ntBASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A6A6NMZ7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 AP000593.1-201ENST00000393668 712 ntBASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A6A6NMZ7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A6A6NMZ7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A6A6NMZ7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.27■□□□□ 0.51
COL6A6A6NMZ7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 FAM87A-204ENST00000613235 858 ntBASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 PCED1CP-201ENST00000419887 785 ntBASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A6A6NMZ7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 EGLN1P1-201ENST00000531623 762 ntBASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 CR392000.1-201ENST00000624770 1228 ntBASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A6A6NMZ7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms