Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 DUX4L26-201ENST00000489078 1255 ntBASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 CR392000.1-201ENST00000624770 1228 ntBASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 AC027702.1-201ENST00000563810 1770 ntBASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC163A0A0D9SF12 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 HLA-G-202ENST00000376815 851 ntBASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 HLA-G-203ENST00000376818 1127 ntBASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC163A0A0D9SF12 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 MIR2861-201ENST00000636310 90 ntBASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC163A0A0D9SF12 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AC242852.2-201ENST00000615738 1807 ntBASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AL390955.1-201ENST00000428694 934 ntBASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC163A0A0D9SF12 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC163A0A0D9SF12 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC163A0A0D9SF12 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC163A0A0D9SF12 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.02■□□□□ 0.79
CCDC163A0A0D9SF12 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC163A0A0D9SF12 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms