Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 CNN2P6-201ENST00000439038 900 ntBASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS29Q9UBQ0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 AC068338.2-201ENST00000563278 1430 ntBASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 RARRES2P4-201ENST00000514074 484 ntBASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS29Q9UBQ0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 BID-214ENST00000617586 542 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 AC100791.3-201ENST00000617619 330 ntBASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS29Q9UBQ0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 TCF3P1-201ENST00000423021 1937 ntBASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS29Q9UBQ0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 AFG3L1P-217ENST00000557444 2447 ntBASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 MCRIP2P1-201ENST00000394346 511 ntBASIC19.34■□□□□ 0.69
VPS29Q9UBQ0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms