Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 MIR574-201ENST00000385209 96 ntBASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 B3GAT3P1-201ENST00000471720 806 ntBASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 ZNF444P1-201ENST00000559497 298 ntBASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 AC140113.3-201ENST00000605663 199 ntBASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 BX640515.1-201ENST00000617215 977 ntBASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL25A1Q9BXS0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 AC083849.1-201ENST00000615227 514 ntBASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
COL25A1Q9BXS0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 AL023973.1-201ENST00000624619 620 ntBASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.72■□□□□ 0.91
COL25A1Q9BXS0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 AC026271.3-201ENST00000571884 352 ntBASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 AF228730.7-201ENST00000641842 219 ntBASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.71■□□□□ 0.91
COL25A1Q9BXS0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
COL25A1Q9BXS0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 AC011506.1-201ENST00000474329 610 ntBASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 AL662844.1-201ENST00000546340 181 ntBASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 AC027796.2-201ENST00000575326 344 ntBASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL25A1Q9BXS0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms