Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 MIR638-201ENST00000385237 100 ntBASIC15.12■□□□□ 0.01
LINC00477Q96M19 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LINC00477Q96M19 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.12■□□□□ 0.01
LINC00477Q96M19 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 AFG3L1P-217ENST00000557444 2447 ntBASIC15.11■□□□□ 0.01
LINC00477Q96M19 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 AC097381.1-201ENST00000429019 1296 ntBASIC15.11■□□□□ 0.01
LINC00477Q96M19 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 SP2-202ENST00000613139 908 ntTSL 5 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 AC019069.1-201ENST00000610008 1333 ntBASIC15.11■□□□□ 0.01
LINC00477Q96M19 SMG8-203ENST00000578922 2178 ntBASIC15.11■□□□□ 0.01
LINC00477Q96M19 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LINC00477Q96M19 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
LINC00477Q96M19 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 AC004854.2-201ENST00000608450 1441 ntBASIC15.1■□□□□ 0.01
LINC00477Q96M19 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LINC00477Q96M19 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LINC00477Q96M19 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC15.09■□□□□ 0.01
LINC00477Q96M19 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.09■□□□□ 0.01
LINC00477Q96M19 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.09■□□□□ 0.01
LINC00477Q96M19 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC15.09■□□□□ 0.01
LINC00477Q96M19 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 DPP3P2-201ENST00000416030 1696 ntBASIC15.09■□□□□ 0.01
LINC00477Q96M19 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LINC00477Q96M19 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.09■□□□□ 0.01
LINC00477Q96M19 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.08■□□□□ 0.01
LINC00477Q96M19 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LINC00477Q96M19 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LINC00477Q96M19 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms