Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
KRT39Q6A163 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT39Q6A163 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
KRT39Q6A163 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT39Q6A163 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
KRT39Q6A163 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
KRT39Q6A163 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT39Q6A163 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.85■■□□□ 1.09
KRT39Q6A163 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.85■■□□□ 1.09
KRT39Q6A163 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.85■■□□□ 1.09
KRT39Q6A163 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.85■■□□□ 1.09
KRT39Q6A163 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.85■■□□□ 1.09
KRT39Q6A163 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.85■■□□□ 1.09
KRT39Q6A163 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.85■■□□□ 1.09
KRT39Q6A163 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
KRT39Q6A163 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.85■■□□□ 1.09
KRT39Q6A163 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
KRT39Q6A163 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
KRT39Q6A163 GPX1P1-201ENST00000388829 606 ntBASIC21.84■■□□□ 1.09
KRT39Q6A163 LSM12P1-201ENST00000411836 588 ntBASIC21.84■■□□□ 1.09
KRT39Q6A163 BX276092.2-201ENST00000417668 665 ntBASIC21.84■■□□□ 1.09
KRT39Q6A163 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.84■■□□□ 1.09
KRT39Q6A163 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
KRT39Q6A163 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.84■■□□□ 1.09
KRT39Q6A163 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
KRT39Q6A163 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
KRT39Q6A163 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
KRT39Q6A163 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.83■■□□□ 1.09
KRT39Q6A163 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.83■■□□□ 1.09
KRT39Q6A163 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
KRT39Q6A163 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.83■■□□□ 1.09
KRT39Q6A163 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
KRT39Q6A163 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.83■■□□□ 1.09
KRT39Q6A163 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
KRT39Q6A163 AC090192.1-201ENST00000517740 490 ntBASIC21.83■■□□□ 1.09
KRT39Q6A163 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
KRT39Q6A163 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
KRT39Q6A163 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
KRT39Q6A163 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
KRT39Q6A163 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.83■■□□□ 1.08
KRT39Q6A163 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
KRT39Q6A163 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.83■■□□□ 1.08
KRT39Q6A163 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
KRT39Q6A163 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
KRT39Q6A163 AC073130.3-201ENST00000624389 2278 ntBASIC21.82■■□□□ 1.08
KRT39Q6A163 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT39Q6A163 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 MIPEPP3-201ENST00000412105 444 ntBASIC21.82■■□□□ 1.08
KRT39Q6A163 GUSBP6-202ENST00000438529 1198 ntBASIC21.82■■□□□ 1.08
KRT39Q6A163 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
KRT39Q6A163 TSPY6P-201ENST00000448518 926 ntBASIC21.82■■□□□ 1.08
KRT39Q6A163 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
KRT39Q6A163 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.82■■□□□ 1.08
KRT39Q6A163 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT39Q6A163 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT39Q6A163 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.82■■□□□ 1.08
KRT39Q6A163 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT39Q6A163 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.82■■□□□ 1.08
KRT39Q6A163 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
KRT39Q6A163 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT39Q6A163 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
KRT39Q6A163 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.81■■□□□ 1.08
KRT39Q6A163 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.81■■□□□ 1.08
KRT39Q6A163 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
KRT39Q6A163 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT39Q6A163 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT39Q6A163 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.81■■□□□ 1.08
KRT39Q6A163 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms