Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 LTBR-211ENST00000543190 785 ntTSL 3 BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 WWOX-216ENST00000569818 525 ntBASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC88AQ3V6T2 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 AL121829.2-201ENST00000620908 328 ntBASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 AP000525.1-201ENST00000608286 694 ntBASIC24.92■■□□□ 1.58
CCDC88AQ3V6T2 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC88AQ3V6T2 HTR7P1-201ENST00000538670 1336 ntBASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 AL590326.2-201ENST00000625139 305 ntBASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC24.9■■□□□ 1.58
CCDC88AQ3V6T2 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 AC133561.1-201ENST00000568600 2415 ntBASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 NBPF21P-201ENST00000425093 1451 ntBASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC88AQ3V6T2 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC24.89■■□□□ 1.57
CCDC88AQ3V6T2 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC24.89■■□□□ 1.57
CCDC88AQ3V6T2 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.57
CCDC88AQ3V6T2 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC24.89■■□□□ 1.57
CCDC88AQ3V6T2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC88AQ3V6T2 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC88AQ3V6T2 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 AC244015.2-201ENST00000616358 1861 ntBASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 C2orf69P3-201ENST00000565542 1120 ntBASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 AC010947.1-201ENST00000623454 693 ntBASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 AC124283.5-201ENST00000624661 1809 ntBASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.88■■□□□ 1.57
CCDC88AQ3V6T2 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 AC116562.2-201ENST00000507042 360 ntBASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 AL121906.2-201ENST00000621597 723 ntBASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms