Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 AC005332.7-201ENST00000614046 2005 ntBASIC18.76■□□□□ 0.59
RFX4Q33E94 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.75■□□□□ 0.59
RFX4Q33E94 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.75■□□□□ 0.59
RFX4Q33E94 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.75■□□□□ 0.59
RFX4Q33E94 TMEM179-206ENST00000616017 1645 ntBASIC18.75■□□□□ 0.59
RFX4Q33E94 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RFX4Q33E94 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.75■□□□□ 0.59
RFX4Q33E94 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.75■□□□□ 0.59
RFX4Q33E94 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 AC091305.1-201ENST00000479476 895 ntBASIC18.75■□□□□ 0.59
RFX4Q33E94 AC012414.1-201ENST00000556676 535 ntBASIC18.75■□□□□ 0.59
RFX4Q33E94 AF213884.3-201ENST00000563833 479 ntBASIC18.75■□□□□ 0.59
RFX4Q33E94 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.75■□□□□ 0.59
RFX4Q33E94 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX4Q33E94 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.75■□□□□ 0.59
RFX4Q33E94 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
RFX4Q33E94 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.75■□□□□ 0.59
RFX4Q33E94 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.74■□□□□ 0.59
RFX4Q33E94 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.74■□□□□ 0.59
RFX4Q33E94 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.74■□□□□ 0.59
RFX4Q33E94 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.74■□□□□ 0.59
RFX4Q33E94 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.74■□□□□ 0.59
RFX4Q33E94 AL136967.2-201ENST00000623968 743 ntBASIC18.74■□□□□ 0.59
RFX4Q33E94 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.74■□□□□ 0.59
RFX4Q33E94 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.74■□□□□ 0.59
RFX4Q33E94 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX4Q33E94 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX4Q33E94 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.73■□□□□ 0.59
RFX4Q33E94 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.73■□□□□ 0.59
RFX4Q33E94 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.73■□□□□ 0.59
RFX4Q33E94 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.73■□□□□ 0.59
RFX4Q33E94 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX4Q33E94 AC110285.6-201ENST00000617652 491 ntBASIC18.73■□□□□ 0.59
RFX4Q33E94 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
RFX4Q33E94 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.73■□□□□ 0.59
RFX4Q33E94 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
RFX4Q33E94 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RFX4Q33E94 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX4Q33E94 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX4Q33E94 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
RFX4Q33E94 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RFX4Q33E94 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX4Q33E94 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
RFX4Q33E94 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX4Q33E94 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
RFX4Q33E94 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RFX4Q33E94 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.72■□□□□ 0.59
RFX4Q33E94 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.72■□□□□ 0.59
RFX4Q33E94 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX4Q33E94 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX4Q33E94 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 AIRN-201ENST00000601203 4374 ntBASIC18.72■□□□□ 0.59
RFX4Q33E94 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX4Q33E94 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RFX4Q33E94 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX4Q33E94 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms