Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC12.67□□□□□ -0.38
HSPG2P98160 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HSPG2P98160 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HSPG2P98160 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HSPG2P98160 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HSPG2P98160 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HSPG2P98160 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC12.67□□□□□ -0.38
HSPG2P98160 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HSPG2P98160 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC12.67□□□□□ -0.38
HSPG2P98160 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC12.67□□□□□ -0.38
HSPG2P98160 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HSPG2P98160 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC12.67□□□□□ -0.38
HSPG2P98160 CR392000.1-201ENST00000624770 1228 ntBASIC12.67□□□□□ -0.38
HSPG2P98160 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HSPG2P98160 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC12.66□□□□□ -0.38
HSPG2P98160 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC12.66□□□□□ -0.38
HSPG2P98160 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
HSPG2P98160 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
HSPG2P98160 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC12.66□□□□□ -0.38
HSPG2P98160 EGLN1P1-201ENST00000531623 762 ntBASIC12.66□□□□□ -0.38
HSPG2P98160 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.66□□□□□ -0.38
HSPG2P98160 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC12.66□□□□□ -0.38
HSPG2P98160 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 COMT-203ENST00000403184 2217 ntTSL 2 BASIC12.66□□□□□ -0.38
HSPG2P98160 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC12.66□□□□□ -0.38
HSPG2P98160 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC12.66□□□□□ -0.38
HSPG2P98160 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC12.66□□□□□ -0.38
HSPG2P98160 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC12.66□□□□□ -0.38
HSPG2P98160 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC12.66□□□□□ -0.38
HSPG2P98160 LINC01238-205ENST00000567549 1107 ntBASIC12.66□□□□□ -0.38
HSPG2P98160 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC12.66□□□□□ -0.38
HSPG2P98160 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC12.66□□□□□ -0.38
HSPG2P98160 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HSPG2P98160 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC12.65□□□□□ -0.38
HSPG2P98160 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
HSPG2P98160 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC12.65□□□□□ -0.38
HSPG2P98160 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC12.65□□□□□ -0.38
HSPG2P98160 DGCR10-201ENST00000609839 495 ntBASIC12.65□□□□□ -0.38
HSPG2P98160 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC12.65□□□□□ -0.38
HSPG2P98160 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
HSPG2P98160 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC12.65□□□□□ -0.38
HSPG2P98160 PKM-204ENST00000449901 2526 ntTSL 2 BASIC12.65□□□□□ -0.38
HSPG2P98160 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC12.65□□□□□ -0.38
HSPG2P98160 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC12.65□□□□□ -0.38
HSPG2P98160 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC12.65□□□□□ -0.38
HSPG2P98160 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.65□□□□□ -0.38
HSPG2P98160 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
HSPG2P98160 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 IER3-202ENST00000376377 1350 ntBASIC12.65□□□□□ -0.38
HSPG2P98160 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC12.65□□□□□ -0.38
HSPG2P98160 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
HSPG2P98160 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
HSPG2P98160 RNF152P1-201ENST00000397754 604 ntBASIC12.65□□□□□ -0.38
HSPG2P98160 LIN28AP1-201ENST00000429574 405 ntBASIC12.65□□□□□ -0.38
HSPG2P98160 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HSPG2P98160 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC12.65□□□□□ -0.38
HSPG2P98160 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC12.65□□□□□ -0.38
HSPG2P98160 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
HSPG2P98160 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC12.65□□□□□ -0.39
HSPG2P98160 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC12.65□□□□□ -0.39
HSPG2P98160 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC12.65□□□□□ -0.39
HSPG2P98160 TSPY5P-201ENST00000426936 936 ntBASIC12.65□□□□□ -0.39
HSPG2P98160 AL121829.2-201ENST00000620908 328 ntBASIC12.65□□□□□ -0.39
HSPG2P98160 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
HSPG2P98160 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC12.64□□□□□ -0.39
HSPG2P98160 AC020928.2-201ENST00000588717 2197 ntBASIC12.64□□□□□ -0.39
HSPG2P98160 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC12.64□□□□□ -0.39
HSPG2P98160 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 CLN6-221ENST00000637494 765 ntTSL 5 BASIC12.64□□□□□ -0.39
HSPG2P98160 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC12.64□□□□□ -0.39
HSPG2P98160 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC12.64□□□□□ -0.39
HSPG2P98160 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC12.64□□□□□ -0.39
HSPG2P98160 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC12.64□□□□□ -0.39
HSPG2P98160 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms